[Bioc-devel] atena build error on kunpeng2 Linux openEuler 22.03 LTS-SP1 / aarch64

[Hervé Pagès]

Hi Robert,

There's the possibility that some of these BAM files got corrupted when 
downloaded to kunpeng2 local cache.

@Martin Gregorov: Would you be able to try to run the following on kunpeng2?

     library(Rsamtools)
     library(ExperimentHub)
     eh <- ExperimentHub()
     quickBamFlagSummary(eh[["EH8081"]])

If you get an error that the file cannot be opened, then maybe try to 
re-download it with:

     eh[["EH8081", force=TRUE]]

Then try quickBamFlagSummary(eh[["EH8081"]]) again and hopefully it will 
work.

Thanks,

H.

On 10/23/23 08:03, Robert Castelo wrote:
> hi,
>
> our package atena fails to build **only** in kunpeng2 Linux openEuler 
> 22.03 LTS-SP1 / aarch64:
>
> https://bioconductor.org/checkResults/3.18/bioc-LATEST/gDNAx/kunpeng2-buildsrc.html 
>
>
> concretely, the vignette fails to find a BAM file downloaded via 
> ExperimentHub. This does not happen in any of the other platforms. 
> Should we do anything about this?
>
> Thanks!
>
> robert.
>
-- 
Hervé Pagès

Bioconductor Core Team
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