[Bioc-devel] Final list of deprecated package Release 3.18

[Kern, Lori]

I don't see Michael Lawrence listed as an author:

Author: Jason A. Hackney, Melanie Huntley, Jessica L. Larson, Christina
        Chaivorapol, Gabriel Becker, and Josh Kaminker
Maintainer: Jason A. Hackney <hackney.jason using gene.com>, Gabriel Becker
        <becker.gabe using gene.com>, Jessica L. Larson <larson.jessica using gmail.com>

 I have reached out to all the listed maintainers multiple times but if anyone has a way to get in touch with someone or willing to fix it, greatly appreciated.





Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Geistlinger, Ludwig <Ludwig_Geistlinger using hms.harvard.edu>
Sent: Tuesday, October 17, 2023 12:58 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>; Kern, Lori <Lori.Shepherd using RoswellPark.org>
Subject: Re: Final list of deprecated package Release 3.18

It seems we need to do something with regard to ReportingTools - this is a very popular and frequently used package.
Anyone has a way to check in with some of the authors - seems that both Gabe Becker and Michael Lawrence are authors.
I will also take a look what's going wrong.
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Kern, Lori via Bioc-devel <bioc-devel using r-project.org>
Sent: Tuesday, October 17, 2023 7:24 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Final list of deprecated package Release 3.18

The Bioconductor Team is continuing to identify packages that will be deprecated. The final list of deprecated package for 3.18 may be found at

https://support.bioconductor.org/p/9152979/<https://secure-web.cisco.com/1yvt4VmWW7LH7G_xWMXjHE9V1busPAPwnER9x54_JQRO2iPm4tNRAZhe1CDyZbNs1L_vVIjFllUfPFGzwm80eUCN_1_QJDpF6WnLTK4FWtWrLSNAf04mKpoZ8VycrbjD3k-ix4KxVwLiMPs8eNsNNNKv5bYLdWDF3gLwu5AC6TVhPrrjdnDj8_b1kK4hYcdfoll_9Zp6RkxUE_5VtuBiBykrYG4rhROVR1oy3AKqM3R7WCX3NwbvvT4KDXnpPwY8P2InnfsXoz7JDLGwW-75_9appUxpfroWgmZm9UKWKPufWTsfk4n-AZulMVtpInB3a/https%3A%2F%2Fsupport.bioconductor.org%2Fp%2F9152979%2F>

It should be noted, we did try to reach out to the package maintainers as listed in the DESCRIPTION of the package multiple times  and they were either unresponsive or had emails that bounced.  We encourage anyone that is familiar with a package maintainer on the list to reach out to them directly.  These packages can still be reinstated if they fix the ERROR before the 3.19 release in spring and request un-deprecation on this bioc-devel using r-project.org mailing list.

Please do not un-deprecate a package yourself.  You must request the un-deprecation from the Bioconductor core team.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


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