[Bioc-devel] Version Bumped Packages for Mac Intel and Mac Silicon binaries with bad dynamic links

[Jennifer Wokaty]

As a result of some Mac Intel and Mac Silicon binaries for 3.17 and 3.18 not linking correctly to the dynamic libraries as reported at https://support.bioconductor.org/p/9151097/ and on the community Slack, we've corrected the linking on the builders and bumped versions for affected packages listed below so that their binaries may be rebuilt correctly. The new binaries should be available from Wednesday 1pm ET.

If you are a maintainer of one of the affected packages, please remember to pull from git.bioconductor.org before doing work on the corresponding branch.

Additionally, thanks to Herve, we can also see that links are corrected at the end of the build bin step of the report under 'Fixing paths to dynamic libraries.'

3.17

BANDITS
BASiCS
BDMMAcorrect
BPRMeth
BUSpaRse
BUSseq
BayesSpace
CGEN
CNAnorm
COMPASS
CelliD
DEScan2
DESeq2
DNAcopy
DegNorm
DifferentialRegulation
FRASER
GGPA
GRENITS
GeneSelectMMD
GeneticsPed
HDTD
LEA
Linnorm
MSstats
NuPoP
OUTRIDER
SAIGEgds
SC3
SIMLR
SNPRelate
affyPLM
bambu
bandle
bayNorm
ccImpute
celda
chromVAR
densvis
distinct
edgeR
enhancerHomologSearch
epigraHMM
epistasisGA
genefilter
glmGamPoi
graper
iClusterPlus
iPath
impute
oligo
pRoloc
preprocessCore
qpgraph
sSNAPPY
scGPS
scde
scmap
scran
scuttle
signeR

3.18

BPRMeth
CGEN
CNAnorm
COMPASS
DNAcopy
GGPA
GRENITS
GeneSelectMMD
GeneticsPed
GeoDiff
HDTD
LEA
Linnorm
MSstats
NuPoP
SAIGEgds
SIMLR
SNPRelate
affyPLM
densvis
edgeR
genefilter
graper
iClusterPlus
impute
preprocessCore

Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team

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