[Bioc-devel] Omada package failing due to removed dependency

[Kern, Lori]

We do not allow archived packages to be used.  All dependencies must be on CRAN or Bioconductor. So yes if you can get them to reinstate the package on CRAN that would be ideal.  If not you will have to remove the package from the dependency list and either re-write the code used (giving original clusterCrit authors credit) or remove the functionality used from that package.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
Sent: Thursday, June 29, 2023 5:36 AM
To: Sokratis Kariotis <sokratiskariotis using gmail.com>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Omada package failing due to removed dependency

Hi,
in this case maybe it's worth reaching out to the maintainer of
clusterCrit. It was removed from CRAN because of (seems-to-be) minor
warnings, which can be addressed by the clusterCrit developer in no time...

Best,
Oleksii

On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <sokratiskariotis using gmail.com>
wrote:

> Dear Bioconductor team,
>
> I received an email that my package "Omada" is failing in release and
> devel. I had a look and the problem seems to be: *ERROR: dependency
> �clusterCrit� is not available for package �omada�*. So the package
> clusterCrit was removed. Is there a way I can use a archived version of it
> (or something similar) so I don't have to rewrite code based on new
> packages to avoid potentially inconsistencies? Please advise, thank you!
>
> Cheers,
> Dr. Sokratis Kariotis (PhD)
> Agency for Science, Technology and Research (A*STAR)
> Singapore Immunology Network (SIgN)
> Twitter: @s_kariotis <https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis>
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