[Bioc-devel] Request for undeprecation of motifbreakR

Coetzee, Simon S|mon@Coetzee @end|ng |rom c@h@@org
Wed Jun 28 07:05:27 CEST 2023

Dear bioc-devel,

I am sorry for not being responsive to the error messages related to the building of motifbreakR.

As you can likely see, I was responsive to errors earlier in the year, entering many changes to keep up to date with the changing conditions of the Bioc universe, and bugs that I discovered (with the help of users on my github issues).

Earlier in the year, perhaps as a result of altering my email notifications and organization as a result of going on paternity leave, I somehow lost track of a recurrent error introduced as a response to my most recent change to motifbreakR, despite your repeated emails to that effect. On Tuesday June 27, I got an email from my PI indicating that the package has been depreciated.

It appears as though the errors were from the most recent change altering the examples to a couple of my functions, and I have fixed them on upstream/devel. Additionally, I have made sure that any email filters and organizational changes have been reverted to their previously functional states.

As a result of these remedies, I hope that, once again, motifbreakR can be reinstated to good standing in Bioconductor. Is there anything else that I can do to prove my continued enthusiasm and commitment to the package and community?

Thank you,

Simon Coetzee

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