[Bioc-devel] Omada package failing due to removed dependency

[Sokratis Kariotis]

Hey,

I haven't received any responses from the maintainer of ClusterCrit so I
guess I will have to re-write the code used. How can I properly go about
this and credit the authors as well? Thanks!

Cheers,
Sokratis

On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> We do not allow archived packages to be used.  All dependencies must be on
> CRAN or Bioconductor. So yes if you can get them to reinstate the package
> on CRAN that would be ideal.  If not you will have to remove the package
> from the dependency list and either re-write the code used (giving original
> clusterCrit authors credit) or remove the functionality used from that
> package.
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
> *Sent:* Thursday, June 29, 2023 5:36 AM
> *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
> dependency
>
> Hi,
> in this case maybe it's worth reaching out to the maintainer of
> clusterCrit. It was removed from CRAN because of (seems-to-be) minor
> warnings, which can be addressed by the clusterCrit developer in no time...
>
> Best,
> Oleksii
>
> On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
> sokratiskariotis using gmail.com>
> wrote:
>
> > Dear Bioconductor team,
> >
> > I received an email that my package "Omada" is failing in release and
> > devel. I had a look and the problem seems to be: *ERROR: dependency
> > ‘clusterCrit’ is not available for package ‘omada’*. So the package
> > clusterCrit was removed. Is there a way I can use a archived version of
> it
> > (or something similar) so I don't have to rewrite code based on new
> > packages to avoid potentially inconsistencies? Please advise, thank you!
> >
> > Cheers,
> > Dr. Sokratis Kariotis (PhD)
> > Agency for Science, Technology and Research (A*STAR)
> > Singapore Immunology Network (SIgN)
> > Twitter: @s_kariotis <
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-- 
Cheers,
Sokratis Kariotis
PhD Student
University of Sheffield, Medical School
MedTech <https://www.facebook.com/medtechsheffield/>President
Twitter: @s_kariotis <https://twitter.com/s_kariotis>
LinkedIn: http://www.linkedin.com/in/sokratiskariotis

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