[Bioc-devel] Issue with setting Maintainer in new package submission

Thu Feb 23 14:35:57 CET 2023

Yup, just got the confirmation and you were bang-on Mike - thanks so much
for your help!

-Andrew

On Thu, Feb 23, 2023 at 8:27 AM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> It looks like this was resolved
>
> http://bioconductor.org/spb_reports/flowGate_buildreport_20230223082234.html
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Mike
> Smith <grimbough using gmail.com>
> *Sent:* Thursday, February 23, 2023 2:46 AM
> *To:* Andrew Wight <andrew.wight10 using gmail.com>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] Issue with setting Maintainer in new package
> submission
>
> Hi Andrew,
>
> Perhaps I'm not understanding your workflow correctly, but it looks like
> your email in the DESCRIPTION that was uploaded to the Bioc submission
> system is an @dfci.harvard.edu one.  That's what I see at
>
> https://secure-web.cisco.com/1xxLfxJ54hHmGp4_OUxZXWjr_Am_fG32aLqbOekb9_E8yUI5YGk5kaiBtxu_X_KHfYBwqWKcHxMU48ZhtXa7iA1L5FFuGVOEfHfgrxV9EbQ9JadcIGnD8EBpnEp-o_CADiy0BhQwTHms1EVDsmkaxpKdcMiP8qN9WjHX8Ze5A9ZhT4n5haX7sk9Phk_vAaqHqvC6pYFgGZs0tK93BGWabZrJZ2UT5m-IHDfM_M8JTEXp8Kk0sVqa75smez89xwQN58qkoYGhBg8Q6zU9jeGNPnuq06dAUolbQ9Ha20MoZF1K36gHecsE0_M65H0G6hFuk/https%3A%2F%2Fgithub.com%2FNKInstinct%2FflowGate%2Fblob%2Fmaster%2FDESCRIPTION
> and it is
> the same if I checkout the version on the git.bioconductor.org.
>
> I don't see any problem with the way you've formatted the maintainer field,
> so I think if you update both the email and package version number and then
> push the changes to the Bioc repository you should see that error go away.
>
> Best,
> Mike
>
> On Wed, 22 Feb 2023 at 22:54, Andrew Wight <andrew.wight10 using gmail.com>
> wrote:
>
> > Hi all - I've just had my new package submission error on build with
> >
> > ERROR: Maintainer must register at the support site; visit
> >
> https://secure-web.cisco.com/1qnDkkcngczwEfSw3YJ5TxbC2YuDbIoEDwQhD4NLYVlyXa4EKCOgFdbMS2zC7zmFDBiRUBYRw_VDu7tNA18L-gjvdwk2tZNBWy3Xy_96n2sz3LA6vGH4jeragj_6PWR-B1DYm_D8xGBTrvu7HAMaTMMvXC2pWBkg8lU7wyrzYHEqpDlPrfUj_8q8LRk_k7NSjr6zsQOiBLYcXqOWaNiZ_lCtnMHKrmN-WK4OynD8SY4FaUFrpmm8Hx4VaFK8b6JgsJ65FWIE0kUU4NCkDYiSIxjjhjxRfAeoMjOHEF0Z4VnOScYMZzQg03RLrNUdCg7r1/https%3A%2F%2Fsupport.bioconductor.org%2Faccounts%2Fsignup%2F
> >
> > However, I am registered on the support site, so I think I've specified
> the
> > maintainer wrong somehow in the DESCRIPTION file, and would appreciate
> any
> > help figuring out what I'm messing up here. Relevant files & debugging
> I've
> > tried is listed below:
> >
> > *1. Package DESCRIPTION file:*
> >
> > Package: flowGate
> > Type: Package
> > Title: Interactive Cytometry Gating in R
> > Version: 0.99.0
> > Authors using R: c(person("Andrew",
> >                     "Wight",
> >                     email = "andrew.wight10 using gmail.com",
> >                     role = c("aut", "cre")),
> >              person("Harvey",
> >                     "Cantor",
> >                     email = "Harvey_Cantor using dfci.harvard.edu",
> >                     role = c("ldr")))
> > Description: flowGate adds an interactive Shiny app to allow manual
> >     GUI-based gating of flow cytometry data in R. Using flowGate,
> >     you can draw 1D and 2D span/rectangle gates, quadrant gates,
> >     and polygon gates on flow cytometry data by interactively drawing
> >     the gates on a plot of your data, rather than by specifying gate
> >     coordinates. This package is especially geared toward wet-lab
> >     cytometerists looking to take advantage of R for cytometry
> >     analysis, without necessarily having a lot of R experience.
> > License: MIT + file LICENSE
> > Encoding: UTF-8
> > LazyData: false
> > Imports:
> >     shiny (>= 1.5.0),
> >     BiocManager (>= 1.30.10),
> >     flowCore (>= 2.0.1),
> >     dplyr (>= 1.0.0),
> >     ggplot2 (>= 3.3.2),
> >     rlang (>= 0.4.7),
> >     purrr,
> >     tibble,
> >     methods
> > Depends:
> >     flowWorkspace (>= 4.0.6),
> >     ggcyto (>= 1.16.0),
> >     R (>= 4.2)
> > RoxygenNote: 7.2.3
> > Suggests:
> >     knitr,
> >     rmarkdown,
> >     stringr,
> >     tidyverse,
> >     testthat
> > VignetteBuilder: knitr
> > biocViews:
> >     Software,
> >     WorkflowStep,
> >     FlowCytometry,
> >     Preprocessing,
> >     ImmunoOncology,
> >     DataImport
> >
> > *2. Confirming that I'm registered to the support site:*
> >
> https://secure-web.cisco.com/1ASr4QSS3Iq4_HFdAWFzDAalAyQK6RjCCOiSammR1d0qEauMXAgnNfffEnEZ3jXsffC7f-FWX1hvK_IlV1TWAC--0wXjy8u99KoRXAc7D3vONZ9YXvuDaiedY7ahF7l9Ud5Fqp3bdbnaKmnq9lA2_8zNgB8cRMNFYCVW9q2HtG2dhmnSC7LvX_KHeoyMcMhNiHUPn0bFH5-iMs5oJrlMqgO2JdrsgS95YBpVr24ETPzDpxRCTE8I_mVw7XexQt-WbCqRBJ6X7FW-ZfkyhPcOtxx7jmQ736-lMsiQajRpiB6Uk6Sx9SuwvuIlmOgUeO54G/https%3A%2F%2Fsupport.bioconductor.org%2Fapi%2Femail%2Fandrew.wight10%2540gmail.com%2F
> > returns TRUE
> >
> > *3. Some debugging I've done:*
> >
> >    - calling maintainer("flowGate") returns an empty character, but
> calling
> >    desc::desc_get_maintainer() correctly returns me as the maintainer
> >    - Adding a "Maintainer: Andrew Wight <andrew.wight10 using gmail.com>" line
> > to
> >    the DESCRIPTION file completely corrects this error in BiocCheck but
> > then
> >    introduces a new error (since BiocCheck doesn't want me to use the
> >    Maintainer field)
> >    - Taken together, this suggests that I've specified the maintainer
> wrong
> >    in Authors using R, but for the life of me the only way I can see to do it
> is
> >    to add role = "cre" to one of the authors which I've done
> >
> >
> > Again, huge thanks for any help pointing me in the correct direction for
> > fixing this!
> >
> > -Andrew
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
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> >
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