[Bioc-devel] name for new BioC package

Hervé Pagès hp@ge@@on@g|thub @end|ng |rom gm@||@com
Sat Feb 4 07:02:49 CET 2023

Hi Matteo.

We had DESeq2 after DESeq, Rbowtie2 after Rbowtie, MOFA2 after MOFA, 
etc.. so I don't see any problem, but thanks for asking!



On 03/02/2023 00:08, Matteo Tiberti wrote:
> dear maintainers,
> I am currently listed as maintainer of Bioconductor package MoonlightR, designed for the prediction of cancer driver genes, which implements the Moonlight workflow.
> We are currently working on a second version of our workflow, called Moonlight2, and would like to have it released on Bioconductor as well, in form of the Moonlight2R package. The new package uses similar principles as the current one, but will have significant changes and updates, both in terms of new functionality and revision of old functionalities. The Moonlight2R project/paper will also have in part a different corresponding authorship respect to the current one. MoonlightR and Moonlight2R currently reside in two separate GitHub repositories.
> Ideally we would like to have both packages on BioConductor for the moment, the old one (called MoonlightR) and the new one that we intend to submit before the April cut-off for 3.17 (called Moonlight2R), where the number signifies the version of the protocol rather than the software. However on the package submission list, I see that having package names that "imply a temporal relationship" respect to an existing package is discouraged. Given the circumstances, do you think it would be possible to use the Moonlight2R name for the package (i.e. would it be a reason for rejection or object of revision during submission) or is it fair to keep it as is?
> Many thanks
> Matteo Tiberti
> Danish Cancer Society Research Center
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Hervé Pagès

Bioconductor Core Team
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