[Bioc-devel] RforProteomics: vignette error - cannot find the file(s)

[Oleksii Nikolaienko]

Hi,
I wonder if it's because the entire "vignettes/figures" is not pushed to
Bioc git (it's included in your .gitignore). And the previous chunk does
not re-create the figure.

Best,
Oleksii


On Fri, 28 Apr 2023 at 15:24, Laurent Gatto <laurent.gatto using uclouvain.be>
wrote:

> I am puzzled by this error:
>
> The vignette fails because it can't find a figure
>
> * checking re-building of vignette outputs ... ERROR
> Error(s) in re-building vignettes:
> --- re-building ‘RProtVis.Rmd’ using rmarkdown
> Quitting from lines 607-608 (RProtVis.Rmd)
> Error: processing vignette 'RProtVis.Rmd' failed with diagnostics:
> Cannot find the file(s): "figures/msanim1.gif"
> --- failed re-building ‘RProtVis.Rmd’
>
> Even though that figure does exists [1].
>
> I am unable to reproduce locally and on Github [2]
>
> Source: [3]
>
> Any idea?
>
> Laurent
>
> [1] https://github.com/lgatto/RforProteomics/tree/master/vignettes/figures
> [2] If fails at the moment, but for a different reason - a dependency is
> not (yet?) available
> [3]
> https://master.bioconductor.org/checkResults/3.17/data-experiment-LATEST/RforProteomics/nebbiolo1-checksrc.html
>
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