[Bioc-devel] Windows build error

Jennifer Wokaty Jenn||er@Wok@ty @end|ng |rom @ph@cuny@edu
Tue Apr 25 01:00:18 CEST 2023


cfTools will be still be included in 3.17. I don't see the error relating to conda on today's build report. We don't directly manage conda on the builders and allow basilisk to handle it. I can try clearing the cache on the 3.17 Windows builder this week to see if that helps.

Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of RAN HU <huran using ucla.edu>
Sent: Thursday, April 20, 2023 2:58 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Windows build error

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Dear BioC team,

I wonder if this error is caused by your Windows environment. Or is there
anything I can do to fix it?

If this Windows build error is not solved, will cfTools still be included
in the 3.17 release version?

Thanks in advance!


On Tue, Apr 18, 2023 at 4:46 PM RAN HU <huran using ucla.edu> wrote:

> Hi all,
> My package cfTools has recently been accepted. I just found that there is
> a build error on Windows: Multiple platform build/check report for BioC
> 3.17 - BUILD results for cfTools on palomino3 (bioconductor.org)
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.17_bioc-2DLATEST_cfTools_palomino3-2Dbuildsrc.html&d=DwIFaQ&c=mRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY&r=FKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA&m=a5vg0H-TJG4KeZppnKMuNeJ5EAUERiCoGcYn3fd9i4oH62Nu-WzHwN2s1gQRetTh&s=KOoT4OpK2XZLs9HelMrfHFQOnn7jiUQUwZZVoZ4tUPE&e= >,
> citing:
> ==> WARNING: A newer version of conda exists. <==
>   current version: 4.12.0
>   latest version: 23.3.1
> Please update conda by running
>     $ conda update -n base -c defaults conda
> Quitting from lines 160-162 (cfTools-vignette.Rmd)
> Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
> cannot open the connection
> --- failed re-building 'cfTools-vignette.Rmd'
> How can I fix this?
> Many thanks,
> Ran

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