[Bioc-devel] Request for advice on ANCOMBC package error messages in Linux platform
Huang Lin (Frederick)
hu@ng||n|reder|ck @end|ng |rom gm@||@com
Tue Apr 18 21:05:37 CEST 2023
Dear BioC team,
I am the creator of the ANCOMBC package (
Recently, I committed a bug-fixed change to the ANCOMBC package.
Unfortunately, I received error messages for both Bioc 3.16 and 3.17. The
error occurred ONLY on the Linux platform (nebbiolo2 for Bioc 3.16, and
nebbiolo1 for Bioc 3.17), stating a vignette re-building error that :
Error(s) in re-building vignettes:
--- re-building ‘ANCOM.Rmd’ using rmarkdown
--- finished re-building ‘ANCOM.Rmd’
--- re-building ‘ANCOMBC.Rmd’ using rmarkdown
--- finished re-building ‘ANCOMBC.Rmd’
--- re-building ‘ANCOMBC2.Rmd’ using rmarkdown
Quitting from lines 1093-1103 (ANCOMBC2.Rmd)
Error: processing vignette 'ANCOMBC2.Rmd' failed with diagnostics:
object 'out' not found
--- failed re-building ‘ANCOMBC2.Rmd’
--- re-building ‘SECOM.Rmd’ using rmarkdown
--- finished re-building ‘SECOM.Rmd’
SUMMARY: processing the following file failed:
Error: Vignette re-building failed.
The package works fine with Windows and macOS platforms.
As the release date for Bioc 3.17 is approaching, I would greatly
appreciate your advice on how to address this issue in a timely manner.
Thank you very much!
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