[Bioc-devel] methylclock package error in devel branch with Palomino4

Dolors Pelegrí do|or@@pe|egr| @end|ng |rom |@g|ob@|@org
Tue Sep 13 10:33:10 CEST 2022


I have seen that the methylclock package does not build correctly in the
devel repository with the Palomino4 server.
The error it shows is related to resources

snapshotDate(): 2022-08-23
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
Warning: file '22fc76c563d9_7418' has magic number 'SQLit'
  Use of save versions prior to 2 is deprecated
Quitting from lines 210-214 (methylclock.Rmd)
Error: processing vignette 'methylclock.Rmd' failed with diagnostics:
failed to load resource
  name: EH7368
  title: Coefficients EN clock
  reason: error in evaluating the argument 'x' in selecting a method
for function 'get': bad restore file magic number (file may be
corrupted) -- no data loaded
--- failed re-building 'methylclock.Rmd'

SUMMARY: processing the following file failed:

Error: Vignette re-building failed.
Execution halted

The error only occurs on this server and I don't know if it is due to the
cache or the error may be related to the methylclockData packet

Any help would be greatly appreciated


Dolors Pelegrí Sisó



Barcelona Institute for Global Health

Barcelona Biomedical Research Park (PRBB)

Doctor Aiguader 88

E-08003 Barcelona, Spain

Tel. +34 93 2147351

dolors.pelegri using isglobal.org <samuel.espinal using isglobal.org>



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