[Bioc-devel] Check error after deadline

[Kern, Lori]

Yes the package will stay in the release.  We say today to fix ERROR's because it will guarantee a run on the daily builder and build report.  After this time changes pushed may not be reflected before we branch and then any remaining ERRORs may need to be applied to the RELEASE_3_16 branch (created next Tuesday for all package by the core team) and the master (devel) branch.  In general,  if we know that maintainers are actively trying to fix a package we will not deprecate and it will remain in the release.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Burak Ogan Mancarci <ogan.mancarcii using gmail.com>
Sent: Friday, October 28, 2022 12:08 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Check error after deadline

Hi,

On the release schedule (
https://secure-web.cisco.com/1MuZMLBOSidorwdc-i0rEc71hYGPikoZNFOaC8Xa_Yfu2lP_t_nkZdWS_vT998Mp1jj2uGofsq8sUTfY2kH02JI-wl7g4OgeWMtmMhY6nWdhHNSI2MApMe8sViNxX0-za6cif2jmY-vBz7_w8E46mLEruDDheaka14Vza5QHO6QwBtHacdACSe-95ZfSywisr_xkNbuL13lYXtFgZmNYXs9zkbYzVXnOoKK6pCiV7MKQI4kBk7u9XtuvaQ5XbwtPmGBOiJDG1b_6akKWEH6cpRzgTuBihtIDquyCF4-m5r9Xm8noOr2qayDBNTSndnMAL/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Frelease-schedule%2F) it was stated that
the last day to pass without errors was 28th. In the latest build of
gemma.R triggered by changes to documentation, we got a connection timeout
error when communicating with the API that the package wraps in the MacOS
test. I was wondering if it was possible to make it to the release
regardless. A re-try will fix the issue.

Problematic build:
http://secure-web.cisco.com/1oK3fXzrxW6IQeORpAiyB5xx6uYVjF-tMGr-DGa6D_2TFrT9fRNNf_SbDGRh_NnC8N0f-zm_OFl02Y5PQh9aI2bYy4tNyKwvTAbIT6lTrO4tWUaP5vskXC1yIHHKkj_oioRuW12Pzk8P5CsDK_BSaShZ91RZ5gyn2P-ousCYFu3oy8zrOvfNPYQKBx46XfVLKOfkC9z4GShmZXLj0oKot9o2mi9bfWGa64QLbBzzQznwSAYL9jfnW60kqe69l5VK2RSRkR3-YbtBuFsRo2z7FgXXGO0KjOpnXwG679c4XS6-2IZhF3NDUKlWBVeoMb79E/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fgemma.R%2Flconway-checksrc.html

Cheers,
Ogan

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