[Bioc-devel] Build Problems

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Wed Oct 12 13:36:25 CEST 2022

The builds occur once a day.  Depending on when you push it can take up to 48 hours to see the results on the build report page.  See
which has some suggest times.

Likely, you pushed too late on Monday October 10th to see the change in yesterday's (Tue) build report.  I would expect to see the changes on today's.  The changes you pushed up today (an additional version bump) would not appear until tomorrow or Friday.

The landing page for the package will not be updated until the build report has propagated results.  Normally a few hours after the daily report is posted.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Br�ggemann, Mirko <mirko.brueggemann using bmls.de>
Sent: Wednesday, October 12, 2022 6:16 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Build Problems

Hello Bioconductor,

I�m sorry for asking again, but I still have trouble updating my package BindingSiteFinder (http://secure-web.cisco.com/1Hp9sQMt1i02nYs-meF8RS_0ryZbRXBqQgd9aF1EUZyjADH8eemWjbRCdcLz5SQsk7Jh8lwD623t_Z15aBHlhGL3X00d8J_SQD1uLAAViGyHBNx7jUW4AdPKp8W0l1eCkPG69uPVt8Rgz1MJF2DQg6n__uo1duKFx0LHZ5B-rCQBcrslCxrdaY6Xm40HV6MVUKC94-yj4YQT2goFolT_HD-0EsB0D3zZoQR9Y-2g45k4jY_szMgEuL5rv2Af7GCESWW1-JcZr8obJ388CicL4f5ESbfJpaZXfZMSbbcwYIkJoEUgQHvPPnYLT9k-GUcEr/http%3A%2F%2Fbioconductor.org%2Fpackages%2F3.16%2Fbioc%2Fhtml%2FBindingSiteFinder.html).

I increased the version number in the DESCRIPTION file, pushed all changes to github and also to Bioconductor, following the workflow in https://secure-web.cisco.com/1x5YHRxTJ3QPCyz66qxw2XAzfkMp9wmL-uw3wWtnZ-1xCM17trsCabQx62bSf129omyww0T0kFXr0-km4rYKk4XhspLV5UFyticq95efM8kQX6rOsZdYkrQ9bG0PudBpOSjgkWgG80PRkF-TqXZFMwIwZrwRfh3ldpkGmWVp0bdp7PEZ3uk3CEyZkiCj-4ofiPX2i4xYme_fbtVXEKlwxUbAi-fJFKi4ZVHD07vPKfY7gSq6XHYtz00r0NCH3dXL7Nd-oVAxLl53JzV2sbJ88x01FEjADQD9s46OG2XitouR5CzHnnFcFGzR_vCB5M6km/https%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23scenarios-for-code-update I get no errors or warnings. Every output looks as expected.

But when I check the build report, things get interesting (http://secure-web.cisco.com/1WlBfiTCis4ADeFyZCBQ4RAumZblfx7pEisoj_NjZW3Ryg_rWTkDMMD1kx6RgngRG8IXBqcAh9USshsTtjovVBab9IukDZ5yarvpAzVetWpz8PMEDHA0wO6QzZ4rPO-RADr5Ue9AI4EqYElFbfyvv-LMmuR3uUeMqE3rSd-CprwiOB2TfbPjeCFB1tbmGX8LjBY3qHPRWpX-jPWGW-Dl6gIDkkYz0Ak7fpcwPHH31TTVUxeATJImiAnFqnNM1gAqzWLjIUXNPbFLlJAWLzLIzWDd4MBbfa2OeaOo_l50h2ZgC81HAADvTxzutYdW-SebW/http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FBindingSiteFinder%2F). The site tells me that a new version of the package was build (new date on the top of the page). But the version number and the corresponding git commit is not correct. It should be version 1.3.1 (commit f6bcd84), but it shows version 1.3.0 (commit 10ce962).

I now tried to increment the version number once more (to 1.3.2) to see if that triggers any change, but I have the feeling I�m missing some part of the puzzle her. I would welcome any help or advice on that issue.

Thank you in advance.


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