[Bioc-devel] nebbiolo1 build error in Glimma

[Shian Su]

Hi all,

I’m trying to figure out why my package is failing to build on nebbiolo1 (Ubuntu 20.04).

https://master.bioconductor.org/checkResults/3.15/bioc-LATEST/Glimma/nebbiolo1-buildsrc.html

I believe it spontaneously failed last November without any changes from me, so I had hoped it would go away on its own. The package has no problem building on the Mac and Windows servers, on my personal Mac, Windows and Ubuntu machines, and on the Bioconductor docker image. The offending lines appear to be

library(scRNAseq)
sce <- ZeiselBrainData(ensembl=TRUE)

Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics:
undefined columns selected

The only thing I can think of is that somehow ExperimentHub is behaving differently on that particular build server? Any help is appreciated.

Kind regards,
Shian Su
----
Shian Su
PhD Student, Ritchie Lab 6W, Epigenetics and Development
Walter & Eliza Hall Institute of Medical Research
1G Royal Parade, Parkville VIC 3052, Australia


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