[Bioc-devel] BiocCheck fails during Github action workflow

[Marcel Ramos]

Hi Oleskii,

This is related to the issue here 
https://github.com/Bioconductor/BiocCheck/issues/148
It should be working with version 1.31.30 which should propagate in 
48-72 hours.

Best regards,

Marcel

On 1/29/22 9:42 AM, Oleksii Nikolaienko wrote:
> Hi,
> this question probably relates to Bioc docker images, thus asking here
> first.
> I am using biocthis GitHub action
> <https://github.com/BBCG/epialleleR/blob/master/.github/workflows/check-bioc.yml>
> and
> I recently noticed that it started to fail with a BiocCheck message:
> "ERROR: dependencies ‘GenomicRanges’, ‘BiocGenerics’, ‘GenomeInfoDb’,
> ‘SummarizedExperiment’, ‘VariantAnnotation’, ‘data.table’, ‘Rcpp’, ‘BH’,
> ‘Rhtslib’, ‘zlibbioc’ are not available for package ‘epialleleR’".
> Does it relate to some changes in docker images, or BiocCheck::BiocCheck
> configuration, or it's wrong invocation (in a pretty standard action
> workflow)?
>
> Best regards,
> Oleksii
>
> 	[[alternative HTML version deleted]]
>
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Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Care
Dept. of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263



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