[Bioc-devel] Check report error on Windows platform

Zheng, Shuyu @huyu@zheng @end|ng |rom he|@|nk|@||
Wed Aug 10 10:34:06 CEST 2022

Hi Jiping,

The log on https://bioconductor.org/checkResults/devel/bioc-LATEST/NuPoP/palomino4-checksrc.html shows the error is from examples in "NuPoP-Ex.R".  You called " base::assign(".ptime", proc.time(), pos = "CheckExEnv")" in this file. If you check the doc for function "proc.time()". There is a statement " Times of child processes are not available on Windows and will always be given as NA."

I guess this is the source of the error.


On 09/08/2022, 00:41, "Bioc-devel on behalf of Hervé Pagès" <bioc-devel-bounces using r-project.org on behalf of hpages.on.github using gmail.com> wrote:

    Hi jiping,

    I suspect R dies during the call to predNuPoP(). Could this be related 
    to the recent changes you made to the master branch of the package, in 
    particular to changes to the Fortran code? Note that the Fortran 
    compiler of the Mac builder emits a warning about the size of the 
    'trann4' array being unsafe:


    We don't see this warning on the Mac builder in release so may it's an 
    issue that got introduced recently?


    On a different note, could you please remove the files in the 
    NuPoP/inst/doc/ folder? These files don't belong to git (they get 
    automatically generated and added to the package source tarball by 'R 
    CMD build').



    On 08/08/2022 07:24, Jiping Wang wrote:
    > Hi,
    > Could anyone give some hints on the check errors of my package for windows system? It seems everything was fine for linux and macs. Please see checkResults page below. Thanks.
    > Best,
    > jiping
    > https://bioconductor.org/checkResults/devel/bioc-LATEST/NuPoP/palomino4-checksrc.html
    > 	[[alternative HTML version deleted]]
    > _______________________________________________
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    Hervé Pagès

    Bioconductor Core Team
    hpages.on.github using gmail.com

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