[Bioc-devel] mapToAlignments_issue

David Porubsky d@v|d@porub@ky @end|ng |rom gm@||@com
Wed Aug 3 19:49:10 CEST 2022

Dear Bioc-team,

I'm trying to map genome coordinates back to local (contig/read)
coordinates, however, I have an issue to do this properly in cases when
alignment between contig and the genome (reference) is in minus (reverse)
Is there a way to use function GenomicAlignments::mapToAlignments in strand
aware fashion such that reverse alignments will be mapped in minus

Is there an example code on how to this properly?

Thank you in advance,


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