[Bioc-devel] Bioconductor 3.15 db0s, OrgDbs and TxDbs now available

[Interdonato, Kayla]

It was brought to our attention that there was an issue with the Arabidopsis annotation packages that were built for this release. The issue was resolved and new versions of the packages are now available. We have also have an updated TxDb package for this release that I forgot to add to the list below.

Updated db0 package:

Arabidopsis.db0_3.15.1.tar.gz

Updated OrgDb package:

org.At.tair.db_3.15.1.tar.gz

New TxDb package:

TxDb.Celegans.UCSC.ce11.ensGene_3.15.0.tar.gz

Best,
Kayla

From: Interdonato, Kayla <Kayla.Morrell using RoswellPark.org>
Date: Tuesday, April 12, 2022 at 10:05 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming
Bioconductor 3.13 release are up and available for download in the devel version
of Bioconductor.

The deadline for submitting contributed annotations will be Wednesday April 13th.

The new db0 packages are:

anopheles.db0_3.15.0.tar.gz
arabidopsis.db0_3.15.0.tar.gz
bovine.db0_3.15.0.tar.gz
canine.db0_3.15.0.tar.gz
chicken.db0_3.15.0.tar.gz
chimp.db0_3.15.0.tar.gz
ecoliK12.db0_3.15.0.tar.gz
ecoliSakai.db0_3.15.0.tar.gz
fly.db0_3.15.0.tar.gz
human.db0_3.15.0.tar.gz
malaria.db0_3.15.0.tar.gz
mouse.db0_3.15.0.tar.gz
pig.db0_3.15.0.tar.gz
rat.db0_3.15.0.tar.gz
rhesus.db0_3.15.0.tar.gz
worm.db0_3.15.0.tar.gz
xenopus.db0_3.15.0.tar.gz
yeast.db0_3.15.0.tar.gz
zebrafish.db0_3.15.0.tar.gz

The new OrgDb packages are:

GO.db_3.15.0.tar.gz
org.Ag.eg.db_3.15.0.tar.gz
org.At.tair.db_3.15.0.tar.gz
org.Bt.eg.db_3.15.0.tar.gz
org.Ce.eg.db_3.15.0.tar.gz
org.Cf.eg.db_3.15.0.tar.gz
org.Dm.eg.db_3.15.0.tar.gz
org.Dr.eg.db_3.15.0.tar.gz
org.EcK12.eg.db_3.15.0.tar.gz
org.EcSakai.eg.db_3.15.0.tar.gz
org.Gg.eg.db_3.15.0.tar.gz
org.Hs.eg.db_3.15.0.tar.gz
org.Mm.eg.db_3.15.0.tar.gz
org.Mmu.eg.db_3.15.0.tar.gz
org.Pt.eg.db_3.15.0.tar.gz
org.Rn.eg.db_3.15.0.tar.gz
org.Sc.eg.db_3.15.0.tar.gz
org.Ss.eg.db_3.15.0.tar.gz
org.Xl.eg.db_3.15.0.tar.gz
Orthology.eg.db_3.15.0.tar.gz
PFAM.db_3.15.0.tar.gz

The new TxDb packages are:

TxDb.Hsapiens.UCSC.hg38.knownGene_3.15.0.tar.gz
TxDb.Hsapiens.UCSC.hg38.refGene_3.15.0.tar.gz
TxDb.Rnorvegicus.UCSC.rn7.refGene_3.15.0.tar.gz

Thank you!


Kayla E. Interdonato, MS
Programmer/Analyst
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
(716)845-1300 x4621


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]