[Bioc-devel] Bioconductor package rcellminerData

[Kern, Lori]

Experiment Data packages are built every Tue and Thur.  as shown on the build report header page http://bioconductor.org/checkResults/

The changes pushed up last Thur 14 would have been too late to be included in a Thursday build report.  I expect the changes to be visible after Tomorrow's build report posts.

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Elloumi, Fathi (NIH/NCI) [E] <fathi.elloumi using nih.gov>
Sent: Monday, April 18, 2022 9:12 AM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Cc: Herv� Pag�s <hpages using fredhutch.org>; bioc-devel <bioc-devel using r-project.org>
Subject: Re: Bioconductor package rcellminerData


Hello Lori,



I bumped the rcellminerData dev version from 2.17.0 to 2.17.1 since 4/14 and I did see it on devel builders: http://bioconductor.org/checkResults/3.15/data-experiment-LATEST/rcellminerData/<http://secure-web.cisco.com/1s-iF2UYBJfYCAfGpCmXbWtJhQFybcrBDIVxYSViZrfDLNHBXH6DOqbL9SFxE3YpBywTkE5GNGS1al6M2DDdPQj1fhH8WpjDdMSge4G2HOwp0bJADAn2fSAvYL1NnzzXdu-AjPk3XlzGcFqB71OXS0JBBxr5OFPY30Go-8f4YKkKRsjo-26qrybURbKFPP0i6RvSExG0YYwi1uHja2cKzF_PcEGo7vEpGBjRLGufwLFyTjmpp-uo7Nt2odBO3OwbPB2PXgv6_p2uau4wSaYkuNGZ6BKgklD_47sgTO_h-oucpA1ln1adMzYXCbrE5OzFq/http%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.15%2Fdata-experiment-LATEST%2FrcellminerData%2F>



Could help me with this issue?



Thanks,



Fathi



From: "Kern, Lori" <Lori.Shepherd using RoswellPark.org>
Date: Tuesday, June 29, 2021 at 10:50 AM
To: "lunaa using cbio.mskcc.org" <lunaa using cbio.mskcc.org>, "Rajapakse, Vinodh (NIH/NCI) [C]" <vinodh.rajapakse using nih.gov>, "Elloumi, Fathi (NIH/NCI) [C]" <fathi.elloumi using nih.gov>
Subject: Bioconductor package rcellminerData



Hello package maintainer,



We would like to bring to your attention that your package is failing on the devel builders of Bioconductor:



http://bioconductor.org/checkResults/3.14/data-experiment-LATEST/rcellminerData<http://secure-web.cisco.com/1wTHb4J5vYt79t1m8zlFtYsm9GvIk_ERR_mIiz8DJ7FKPtWOrlHAMPFSIg9IJNrdx4yDn72YFxwEA2JLKY-yrddpSDKVmIwZKNbMfxBnZBsZJv9jUiV2JzZ3KGALeIW4nOObhPYbxDjjaD1Ee8HymsDdkkQ88v5MwhPXJyf_QPTmsUxJNvj7j1OI7G8t0ZohewDr43q6cQ0aGQ7d_VQQeoRf_Km-v1cWRJBH0TQqxj0iRjn_LdKla1rB3zAvE_n9D-etgmJXwm7hZEomnbN40wUMGfwWg_5w7GXN1mzAicTaHOwVs5mqdd1iXkWPoXqxt/http%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.14%2Fdata-experiment-LATEST%2FrcellminerData>



Please fix your package as soon as possible. If the package remains broken for an extended period of time, we will deprecate the package.



The ERROR results from an update in the knitr package as announced here:

https://stat.ethz.ch/pipermail/bioc-devel/2021-June/018223.htm<https://secure-web.cisco.com/1dwHEjF3CCkUF9mhzYvELi0IoERCWPTDzCNUl4bPe8QHKf5aWv9Qj7RinMoAinXfZQvzIbamMr9vgVmcKdKentGLNBYnF2icPuu6W6_BL5oPPpiMgeN75gzr7wVSN9HVhgO93pdFjVPQP0JuYPlQ2bB4Dik9A4Q20nYCBe4Bd4tDAQvTN1GbdpgPgLrBMRFNYqgqajL57mzfzHHN8dg-jexyKc1H3rYdb1_uRMdKdYWnvIEw-vql288A4M3FJnSNcLPgtSljKQUrif5aUsoGTLc2rUrxs19wMcq0jf79X5HrQe6d4TQatb84HbMxl2_az/https%3A%2F%2Fstat.ethz.ch%2Fpipermail%2Fbioc-devel%2F2021-June%2F018223.htm>



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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