[Bioc-devel] List of Deprecated Packages for Bioc3.15

[Kern, Lori]

Ularcirc has been fixed and will be undeprecated.

CAnD has been identified as unresponsive and will be deprecated.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Kern, Lori
Sent: Thursday, March 31, 2022 12:48 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: List of Deprecated Packages for Bioc3.15

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. This is the current list of deprecated packages for Bioc 3.15 :

Software:

User Requested:
caOmicsV
clonotypeR
GCSFileSystem
GCSConnection
genphen
ppiStats
ProteomicsAnnotationHubData
PSICQUIC
PubScore
Rgin
RpsiXML
ScISI
SLGI
Sushi

Unresponsive:

ABAEnrichment
Autotuner
CHETAH
CountClust
diffloop
GenoGAM
gprege
Onassis
perturbatr
phemd
RmiR
tofsims
TSRchitect
Ularcirc

ExperimentData

User Requested:
ppiData
DREAM4

Unresponsive:
MSstatsBioData



It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel using r-project.org mailing list.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


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