[Bioc-devel] midasHLA problems reported in the Multiple platform build/check report for BioC 3.15

[Kern, Lori]

It looks like it actually clean in today's build report.

But for the sake of argument:
Ideally we would want ERROR's resolved as soon as possible. If you waited until R release 4.2, you will likely have to import the fixes to both the release and devel branches of Bioconductor as the Bioconductor release immediately follows the release of R.

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of migdal migdal <mcjmigdal using gmail.com>
Sent: Thursday, April 7, 2022 11:22 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] midasHLA problems reported in the Multiple platform build/check report for BioC 3.15

Hi,

one of my packages started to fail under the new R version, I started to
investigate but the issue appears to be not straightforward to solve and
somehow related to the changes introduced in R4.2. As the R is still in the
prelease unstable version I would prefer to wait until official release
before I start to invest more time in creating a reproducible example and
seeking help online.

Given the shortly upcoming Bioconductor 3.15 release, my question is are
there any consequences if these errors will not be resolved before the
release date or can I take my time here?

Best MM

On Wed, 6 Apr 2022 at 19:00, <BBS-noreply using bioconductor.org> wrote:

> [This is an automatically generated email. Please don't reply.]
>
> Hi midasHLA maintainer,
>
> According to the Multiple platform build/check report for BioC 3.15,
> the midasHLA package has the following problem(s):
>
>   o ERROR for 'R CMD build' on nebbiolo1. See the details here:
>
> https://secure-web.cisco.com/11FQyP5LRTnZ51jZl-mB1WkkYADREm06RG8bqKhOsOhn8MLVaC5ns8HbX_U91KgnYYtEIWc5s_F4eL9ED9A1fobFZm_4BeNNl3wMiM7L-Z5vS6ZTjV9Ime6KNQTFOTOluGaSZpQiPmby36J-XWMl9xciF6L3IKGsX_O-MMuBJHgeCtWKkVDM4sAawp3MwPw1ENtnBs9S9GayIMICwo0vErOB10WvkJWH4gfiOwjTcRHucyTMitxIyrI4oprIVFPuTo0YdqDqcNluDnehhhvnyN2iCaK9RRc3yBpY9PbZGEqZacF9ZdgPeBrGSQUuL1pe5/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2FmidasHLA%2Fnebbiolo1-buildsrc.html
>
> Please take the time to address this by committing and pushing
> changes to your package at git.bioconductor.org
>
> Notes:
>
>   * This was the status of your package at the time this email was sent to
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