[Bioc-devel] EXTERNAL: Bioconductor build system using old commit

Marcel Ramos m@rce|@r@mo@perez @end|ng |rom ro@we||p@rk@org
Fri Sep 17 21:25:47 CEST 2021

Hi Eric,

This is the devel build report and it includes a commit from Mon Aug 16:

If you need to patch the release version as well, follow the guide that 
Jim kindly posted:

Best regards,


On 9/17/21 2:14 PM, Kort, Eric wrote:
> Good day. I have made updates to my package, slinky. I pushed my changes both to my github rep, and the Bioconductor git repository.
> My remotes are set up as follows:
>> git remote -v
> origin     https://github.com/vanandelinstitute/slinky (fetch)
> origin     https://github.com/vanandelinstitute/slinky (push)
> upstream             git using git.bioconductor.org:packages/slinky.git (fetch)
> upstream             git using git.bioconductor.org:packages/slinky.git (push)
> Following directions here: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/
> I then did
> git fetch upstream
> git merge upstream/master
> git push origin master
> But on the build system (https://bioconductor.org/checkResults/3.13/bioc-LATEST/) where errors are being encountered, the git_last_commit shows an old commit and commit date.
> Do I have the wrong remote? Or is there another mistake I am making?
> -Eric
> 	[[alternative HTML version deleted]]
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Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263

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