[Bioc-devel] Bioconductor build system using old commit

James W. MacDonald jm@cdon @end|ng |rom uw@edu
Fri Sep 17 20:23:08 CEST 2021

You are pushing to the master repo, but then are checking the build results from the RELEASE_3_14 branch. Are you also checking out the release branch and making changes/pushing there as well? http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/



-----Original Message-----
From: Bioc-devel <bioc-devel-bounces using r-project.org> On Behalf Of Kort, Eric
Sent: Friday, September 17, 2021 2:15 PM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Bioconductor build system using old commit

Good day. I have made updates to my package, slinky. I pushed my changes both to my github rep, and the Bioconductor git repository.

My remotes are set up as follows:

> git remote -v
origin     https://github.com/vanandelinstitute/slinky (fetch)
origin     https://github.com/vanandelinstitute/slinky (push)
upstream             git using git.bioconductor.org:packages/slinky.git (fetch)
upstream             git using git.bioconductor.org:packages/slinky.git (push)

Following directions here: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/

I then did

git fetch upstream
git merge upstream/master
git push origin master

But on the build system (https://bioconductor.org/checkResults/3.13/bioc-LATEST/) where errors are being encountered, the git_last_commit shows an old commit and commit date.

Do I have the wrong remote? Or is there another mistake I am making?


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