[Bioc-devel] rtracklayer::import (v 1.53.1) fails on xz-compressed files.

[Michael Lawrence]

Hi Charles,

Thanks for reaching out. Please ensure that you have built R with xz
(lzma) support. If this does not resolve your problem, please post on
support.bioconductor.org.

Michael

On Thu, Sep 2, 2021 at 2:54 PM Charles Plessy
<charles-listes+bioc-devel using plessy.org> wrote:
>
> Hello
>
> on my R 4.1.0 system, rtracklayer version 1.53.1 refuses to load
> XZ-compressed GFF files, throwing the error "has unsupported type:
> xzfile".  As the function's manual page states that xz-compressed files
> are handled transparently, I suppose it is a bug?
>
> Have a ncie day,
>
> Charles Plessy
>
> --
> Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.plessy using oist.jp
> Okinawa  Institute  of  Science  and  Technology  Graduate  University
> Staff scientist in the Luscombe Unit - ~ - https://groups.oist.jp/grsu
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>
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Michael Lawrence
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Genentech, A Member of the Roche Group
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