[Bioc-devel] JAVA_HOME cannot be determined on Windows on Bioconductor platform report

Vincent Carey @tvjc @end|ng |rom ch@nn|ng@h@rv@rd@edu
Mon Oct 18 19:13:59 CEST 2021

That should be fixable.  The build system needs to have a correct setting
for JAVA_HOME.  But you have
clearly nonportable code in .onLoad in paxtoolsr.R -- system("which java")
... this should not be
necessary at all, just import rJava.

On Mon, Oct 18, 2021 at 12:29 PM Augustin Luna <cannin using gmail.com> wrote:

> I have the following error:
> "error: JAVA_HOME cannot be determined from the Registry"
> for this package:
> https://bioconductor.org/checkResults/devel/bioc-LATEST/paxtoolsr/riesling1-install.html
> I have been given assurances that Java is present but given this
> error, I am not so sure and I am unsure how to debug or fix it.
> Can anyone suggest how to proceed?
> Thanks,
> Augustin Luna
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