[Bioc-devel] Final List of Deprecated Packages for Bioc3.14

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Wed Oct 13 15:46:45 CEST 2021

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. This is the current list of deprecated packages for Bioc 3.14 :

Maintainer requested deprecation:

  *   Software:


     *   MSstatsTMTPTM
     *   MSGFplus
     *   MSGFgui
     *   alsace
     *   dualKS
     *   slinky
     *   FindMyFriends
     *   PanVizGenerator
     *   RGalaxy

Unresponsive maintainers:




     *   affyPara
     *   ALPS
     *   BrainStars
     *   destiny
     *   ENCODEExplorer
     *   ENVISIONQuery
     *   GeneAnswers
     *   gramm4R
     *   GWAS.BAYES
     *   KEGGprofile
     *   MouseFM
     *   SRGnet
     *   SwimR

  *   Experiment Data:

     *   ABAData
     *   brainImageRdata
     *   PCHiCdata
     *   RITANdata
     *   tcgaWGBSData.hg19

  *   It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel using r-project.org mailing list.

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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