[Bioc-devel] hypeR Bioconductor package

[Nitesh Turaga]

Hi,

What is your upstream remote set as?

	git remote -v

Please send results. It might just be you are using the wrong SSH key. A good solution is to try with a new SSH key on your BiocCredentials app.

Best,

Nitesh


Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute

> On Oct 8, 2021, at 10:34 AM, Federico, Anthony, Nicholas <anfed using bu.edu> wrote:
> 
> So here are my notes for this when pushing changes:
> 
> # Sync with bioconductor dev branch
> git fetch --all
> git checkout master
> git merge upstream/master
> git push upstream master
> 
> This worked for a while (past 3 years) but then at some point the Bioconductor branch on hypeR stopped getting updated. It seems like that last time it worked was in May of this year.
> 
> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/
> Snapshot Date: 2021-10-07 04:50:01 -0400 (Thu, 07 Oct 2021)
> git_url: https://git.bioconductor.org/packages/hypeR
> git_branch: RELEASE_3_13
> git_last_commit: 23b7217
> git_last_commit_date: 2021-05-19 12:41:30 -0400 (Wed, 19 May 2021)
> 
> Sorry for the confusion, my understanding of how to merge things upstream may just be lacking.
> 
> Anthony
> 
>> On Oct 6, 2021, at 11:11 AM, Nitesh Turaga <nturaga.bioc using gmail.com> wrote:
>> 
>> What are you trying exactly?
>> 
>> Please send the exact commands. 
>> 
>> Check -  http://bioconductor.org/developers/how-to/git/ and the FAQ http://bioconductor.org/developers/how-to/git/faq/.
>> 
>> Best,
>> 
>> Nitesh
>> 
>> 
>> 
>> 
>> On Wed, Oct 6, 2021, 4:38 AM Federico, Anthony, Nicholas <anfed using bu.edu> wrote:
>> Hi,
>> 
>> I think I need some help, I somehow lost the ability to update the Bioc branch for hypeR. The GitHub main branch is passing my tests locally but whatever I try never seems to update the BioC servers.
>> 
>> Anthony
>> 
>>> On Oct 4, 2021, at 7:43 PM, nturaga.bioc using gmail.com wrote:
>>> 
>>> hypeR Bioconductor Package Notification
>>> 
>>> Nitesh Turaga1
>>> 
>>> 1Dana Farber Cancer Institute, Boston, MA, USA
>>> 
>>> October 04, 2021
>>> 
>>> Package: hypeR
>>> 
>>> Hi Anthony Federico,
>>> 
>>> I am contacting you concerning the hypeR package, on the release and devel branch of Bioconductor, for which you are listed as the maintainer.
>>> 
>>> The latest build/check report shows that your package is failing on one or more platforms. Please resolve the issues before the next Bioconductor release for your package’s continued inclusion in Bioconductor.
>>> 
>>> https://bioconductor.org/checkResults/release/bioc-LATEST/hypeR/https://bioconductor.org/checkResults/devel/bioc-LATEST/hypeR/
>>> 
>>> Please let me know if you have any questions.
>>> 
>>> Regards,
>>> 
>>> Nitesh
>>> 
>>> Bioconductor Core Team 
>>> Scientist II 
>>> Dana Farber Cancer Institute 
>>> Data Science 
>>> Boston, MA
>>> 
>> 
>