[Bioc-devel] Can't install Bioconductor 3.13 under Windows 10

[Vincent Carey]

This is a known problem and is being investigated.  Thanks for the report.

On Sat, May 8, 2021 at 8:18 AM Gordon K Smyth <smyth using wehi.edu.au> wrote:

> I am currently unable to install any Bioconductor 3.13 packages using
> BiocManager for Windows. Here is a sample R session using R 4.1.0beta for
> Windows. Notice the first time I type `install("Biobase")` there is no
> error message but the package is not installed. The second time and
> subsequent times I use install() I get an error message mentioning
> `readRDS`.
>
> Any ideas?
> Thanks
> Gordon
>
> > library(BiocManager)
> Bioconductor version 3.13 (BiocManager 1.30.13), ?BiocManager::install for
> help
> > install("Biobase")
> Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 beta (2021-05-06
> r80268)
> Installing package(s) 'BiocVersion', 'Biobase'
> also installing the dependency ‘BiocGenerics’
>
> > library(Biobase)
> Error in library(Biobase) : there is no package called ‘Biobase’
> > install("Biobase")
> Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 beta (2021-05-06
> r80268)
> Installing package(s) 'BiocVersion', 'Biobase'
> also installing the dependency ‘BiocGenerics’
>
> Error in readRDS(dest) : error reading from connection
> > sessionInfo()
> R version 4.1.0 beta (2021-05-06 r80268)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 10 x64 (build 18363)
>
> Matrix products: default
>
> locale:
> [1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252
> [3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
> [5] LC_TIME=English_Australia.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocManager_1.30.13
>
> loaded via a namespace (and not attached):
> [1] compiler_4.1.0 tools_4.1.0
>
> ------------------------------------------
> Professor Gordon K Smyth
> Joint Head, Bioinformatics Division
> Walter and Eliza Hall Institute of Medical Research
>
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