[Bioc-devel] Force Package Update after Removing Large Files from .git History

Gabriel Odom godom @end|ng |rom ||u@edu
Thu May 6 16:43:52 CEST 2021

Thank you Nitesh.
Our next step is then to push a version bump to trigger the re-build?
Our contribution issue is still listed as ERROR at this time (https://github.com/Bioconductor/Contributions/issues/2064).

On May 6, 2021, at 10:28 AM, Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>> wrote:

Note: This message originated from outside the FIU Faculty/Staff email system.

Hi Gabriel,

Thanks for taking the time to fix the package size to < 5MB.

I’ve synced your package repo on git.bioconductor.org<http://git.bioconductor.org/>. You should be good to go now.

If you have any further questions on this, please feel free to reply to this thread.



From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Gabriel Odom <godom using fiu.edu<mailto:godom using fiu.edu>>
Date: Thursday, May 6, 2021 at 9:47 AM
To: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
Cc: Fernanda Veitzman <fveit001 using fiu.edu<mailto:fveit001 using fiu.edu>>, Chedraoui Silva, Tiago <txs902 using med.miami.edu<mailto:txs902 using med.miami.edu>>
Subject: [Bioc-devel] Force Package Update after Removing Large Files from .git History
Dear Bioconductor Team,

We are submitting the package coMethDMR (https://github.com/Bioconductor/Contributions/issues/2064<https://urldefense.com/v3/__https://github.com/Bioconductor/Contributions/issues/2064__;!!FjuHKAHQs5udqho!ZMSlQGnw7krUiAqhN05DOh5a1RCVoriVveSuOSy8AqGd4enVVIAmqUCv8Oc9vg$>) and we have fixed all errors and warnings listed in the multi-system build report.
One error was that the package was too large. We followed the steps to use BFG here (https://bioconductor.org/developers/how-to/git/remove-large-data/<https://urldefense.com/v3/__https://bioconductor.org/developers/how-to/git/remove-large-data/__;!!FjuHKAHQs5udqho!ZMSlQGnw7krUiAqhN05DOh5a1RCVoriVveSuOSy8AqGd4enVVIAmqUBGoLYCfQ$>), and we have successfully reduced the package size to <5Mb in our GitHub repository. However, according to those instructions, force pushes are not allowed to the upstream branch, and we are to contact you for help.
Please advise.

Thanks in advance,

        [[alternative HTML version deleted]]

Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list

	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list