[Bioc-devel] Error when building in command line but not in RStudio

Hervé Pagès hp@ge@@on@g|thub @end|ng |rom gm@||@com
Thu Mar 25 21:58:47 CET 2021

On 3/25/21 1:50 PM, AJ Kinstlick wrote:
> Any help on this would be greatly appreciated, but once again I'm not sure
> it's even necessary if I can just build the package in RStudio and submit
> it to Bioconductor.

That's not how Bioconductor works. With Bioconductor packages you push 
changes to your package git repo at 
https://git.bioconductor.org/packages/seq2pathway and we do the rest. Of 
course 'R CMD build' needs to work on your package because that's what 
the daily builds are going to do to produce the source tarball.

The daily build/check report for BioC 3.13 is published here:


Note that seq2pathway is currently broken on nebbiolo1 (Linux builder). 
Maybe that is the same error that you are seeing when you do 'R CMD 
build seq2pathway' on your own machine?


> Thank you,
> AJ Kinstlick
> 	[[alternative HTML version deleted]]
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

Hervé Pagès

Bioconductor Core Team
hpages.on.github using gmail.com

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