[Bioc-devel] Genomics Extension for SQLite seeking R/bioC co-maintainer

[Mike Lin]

On Tue, Jun 1, 2021 at 5:12 AM Vincent Carey <stvjc using channing.harvard.edu>
wrote:

> Thanks Mike, we're having a look.  I haven't found much comparative
> benchmarking data by prowling around your site ... am I missing anything?
> The colab notebook is helpful.
>

Specifically wrt the compression layer, there's a small table here:
https://github.com/mlin/sqlite_zstd_vfs#performance
(The Genomics Extension sets up good defaults for the many obscure tuning
settings discussed there.)
I'd welcome suggestions for other benchmarking aspects of interest. It's
usually going to be a bit nuanced of course, to compare a super flexible
tool like SQLite to code dedicated to specific problems & formats!
Mike

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