[Bioc-devel] List of Deprecated Packages for Bioc3.13  KL
Kern, Lori
Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Jan 25 22:46:45 CET 2021
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. This is the current list of deprecated packages for Bioc 3.13 :
Maintainer requested deprecation:
Software:
BiocCaseStudies
RchyOptimyx
RNAither
SAGx
yaqcaffy
Experiment Data:
ceu1kg
ceu1kgv
ceuhm3
cgdv17
dsQTL
hmyriB36
yri1kgv
Workflow:
eQTL
Unresponsive/not-maintained packages:
Software:
AffyExpress
affyQCReport
ArrayTools
bigmemoryExtras
CexoR
CrossICC
CoRegFlux
DBChIP
dexus
EasyqpcR
genoset
Imetagene
mdgsa
OutlierD
Polyfit
POST
proFIA
RDAVIDWebService
RNAprobR
rnaSeqMap
samExploreR
seqplots
SSPA
Experiment Data:
facsDorit
gskb
JctSeqData
plasFIA
It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel using r-project.org mailing list.
Previously listed as deprecated but have been undeprecated:
ExperimentData
DmelSGI
RNAinteractMAPK
sampleClassifierData
Software
APAlyzer
metagene2
sampleClassifier
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
More information about the Bioc-devel
mailing list