[Bioc-devel] EXTERNAL: R: release of new version of package

Marcel Ramos m@rce|@r@mo@perez @end|ng |rom ro@we||p@rk@org
Mon Dec 20 20:02:25 CET 2021

Hi Emanuela,

You should not be pushing new features to the RELEASE_3_14 branch.
This is meant to be stable throughout the course of the release cycle.

Make sure you are pushing your new commits to the devel branch of
Bioconductor with:

      git push upstream master

Based on your git history, it looks like you were able to make changes.

Do not forget to bump the Z version of your package, e.g.,


in devel so that the new version of the package propagates. This can 
take between 24 - 48 hours.

Best regards,


On 12/20/21 1:43 PM, Emanuela Iovino wrote:
> Dear Nitesh
> thank you for your answer.
>   I followed Bioconductor instruction but when I pushed on
> upstream/RELEASE_3_14 I received always  Everything up-to-date.
> Before to follow Bioconductor instruction I already had pushed all my modification on my Github repository and I don't know if it  got me a problem in next steps.
> I checked the last commit onhttp://bioconductor.org/checkResults/release/bioc-LATEST/uncoverappLib/  and it doesn't match with my last modification.
> Have I to repeat all steps?
> Thanks
> Emanuela
> ________________________________
> Da: Nitesh Turaga<nturaga.bioc using gmail.com>
> Inviato: luned� 20 dicembre 2021 15:36
> A: Emanuela Iovino<emanuela.iovino using unibo.it>
> Cc:bioc-devel using r-project.org  <bioc-devel using r-project.org>
> Oggetto: Re: [Bioc-devel] release of new version of package
> Hi,
> You�ll want these two tutorials since I�m guessing you have a Github Repo and along with the git.bioconductor repo.
> So you�ll first have to sync (1), then push your updates to both Github and Bioc server(2)
> (1)http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
> (2)https://bioconductor.org/developers/how-to/git/push-to-github-bioc/
> Best
> Nitesh Turaga
> Scientist II, Department of Data Science,
> Bioconductor Core Team Member
> Dana Farber Cancer Institute
>> On Dec 20, 2021, at 9:32 AM, Emanuela Iovino<emanuela.iovino using unibo.it>  wrote:
>> Hello everyone
>> I'm the developer and the maintainer of Bioconductor package uncoverappLib .
>> I recently added some features to package and I would like to know how update to Biocondunctor . Do I follow new package workflow ? (https://bioconductor.org/developers/how-to/git/new-package-workflow/).
>> Many thanks in advance
>> Emanuela Iovino
>> PhD Student in Data Science and Computation
>> Division of Medical Genetics
>> Dept. Medical and Surgical Sciences - DIMEC
>> University of Bologna
>> Pol.S.Orsola-Malpighi, via Massarenti 9,
>>         [[alternative HTML version deleted]]
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Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263

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