[Bioc-devel] ERROR in the building report of APAlyzer Dev (1.7.3)

[Ruijia Wang]

Hi,
Just trying to give a following up on this issue, any comments/suggestions
on it? Thanks.

On Sun, Aug 15, 2021 at 8:24 PM Ruijia Wang <rjwang.bioinfo using gmail.com>
wrote:

> Hi BioC-devel,
>
> I am the author of the Bioconductor package APAlyzer (
> https://bioconductor.org/packages/release/bioc/html/APAlyzer.html).  I
> current noticed there is an ERROR in the building report of our latest dev
> version  (1.7.3) on the page of Bioconductor (
> http://bioconductor.org/checkResults/devel/bioc-LATEST/APAlyzer/nebbiolo2-checksrc.html
> ).
>
>>
>> * Error: object 'fout_annot' not found** Backtrace:*
>>
>> * 1. └─APAlyzer::PASEXP_IPA(...) test_IPA_analysis.R:10:8*
>> * 2. └─Rsubread::featureCounts(...)** 3. └─base::file.remove(fout_annot)*
>
>
> However, I can not repeat this error using R 4.1 and Bioconductor 3.14 on
> my end with either *R CMD check* or *BiocCheck("APAlyzer_1.7.3.tar.gz").* And
> I don't recall any of the code updating would trigger the error of
> *base::file.remove()*. Could you help me to figure out how to fix/bypass
> this issue in the building report of Bioconductor? Thanks in advance!
>
> Best,
> Ruijia
>

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