[Bioc-devel] ERROR in the building report of APAlyzer Dev (1.7.3)

[Ruijia Wang]

Hi BioC-devel,

I am the author of the Bioconductor package APAlyzer (
https://bioconductor.org/packages/release/bioc/html/APAlyzer.html).  I
current noticed there is an ERROR in the building report of our latest dev
version  (1.7.3) on the page of Bioconductor (
http://bioconductor.org/checkResults/devel/bioc-LATEST/APAlyzer/nebbiolo2-checksrc.html
).

>
> * Error: object 'fout_annot' not found** Backtrace:*
>
> * 1. └─APAlyzer::PASEXP_IPA(...) test_IPA_analysis.R:10:8*
> * 2. └─Rsubread::featureCounts(...)** 3. └─base::file.remove(fout_annot)*


However, I can not repeat this error using R 4.1 and Bioconductor 3.14 on
my end with either *R CMD check* or *BiocCheck("APAlyzer_1.7.3.tar.gz").* And
I don't recall any of the code updating would trigger the error of
*base::file.remove()*. Could you help me to figure out how to fix/bypass
this issue in the building report of Bioconductor? Thanks in advance!

Best,
Ruijia

	[[alternative HTML version deleted]]