[Bioc-devel] Error building package

[ELENI ADAM]

Dear Lori,

Thank you very much for explaining to me what exactly happened. I have made
the appropriate changes and fixed the issue.

Thank you,
Eleni

On Mon, Apr 19, 2021, 9:21 AM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> Even though you did not make any changes to your package,  a dependency
> you use has changed.  This currently requires attention by you (and any
> other package / package maintainer affected) to make appropriate changes in
> your package code and to push up to bioconductor.org
>
> The changes comes from an update in CRAN package knitr version 1.33.  See
> https://github.com/yihui/knitr/issues/1864 regarding the change.
>
> The ERROR is very informative and following its advice by updating the
> Suggest of the package DESCRIPTION should remedy.
>
> If your vignette is based on the vignette engine knitr::rmarkdown, you
> have to declare the dependency on
>  rmarkdown, e.g.,
>
> Suggests: rmarkdown
> VignetteBuilder: knitr
>
> If your vignette is based on the vignette engine knitr::markdown, you have
> to declare the dependency on
>  markdown, e.g.,
>
> Suggests: markdown
> VignetteBuilder: knitr
>
> For quick reference, here is a useful help page on fixing bugs in release
> and devel for Bioconductor.
> bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>
>
> We are exploring other options for fixing this issue since it affects
> hundreds of Bioconductor package but currently if you would like to follow
> the above instructions it is greatly appreciated.
>
> Cheers,
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of alan
> murphy <alanmurph94 using hotmail.com>
> *Sent:* Saturday, April 17, 2021 4:52 AM
> *To:* ELENI ADAM <eadam002 using odu.edu>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] Error building package
>
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
>
> https://secure-web.cisco.com/1wU9NHjSrv-PW4vXomr3nbTfLlNrpYcAdIXDKF9IJwD_30nfUqXWry9jLafvge770Btz8rqwoqcGM7vvaSr2phWVirmkMR_dDW4c9EA3ddTbEd7-sCu3xxR-_OFWI7jeYGomVtJk74L6CQbCQT2LNSSfboIU_Sxj7jvfmxbEeOTz-HRLJ3ZrBfzlRGSq8RooD1Pz3BkwnJXcQuPiMwg3s_O4B-Jvi6WO5rRjH5L_-ihzGePUJIZVZzOI8NAos9XPYOmHmvWjXJIZ3p_nCDcjnvtHOVJzHyE9jP7PV3b0VSz8WQMeRCs40fbaSM-3SPI86CcZRIzXyxjFgvbzMCUdSig/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.

	[[alternative HTML version deleted]]