[Bioc-devel] Phase 3 1000 genomes reference genome

Murphy, Alan E @@murphy @end|ng |rom |mper|@|@@c@uk
Fri Apr 16 13:28:01 CEST 2021

Hi all,

I am looking for the 1000genomes Phase3 Reference Genome Sequence (equivalent to the Phase 2 version would be useful: BSgenome.Hsapiens.1000genomes.hs37d5 https://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.1000genomes.hs37d5.html). The dataset I'm looking for is also found here for download: https://ctg.cncr.nl/software/MAGMA/ref_data/g1000_eur.zip

Is this available in Bioconductor? I want to use it in a package I'm developing. I know I could download it through the package when needed or store the dataset in as package data but I know neither of these solutions are not good practice for Bioconductor submission.

Kind regards,

Alan Murphy
Neurogenomics lab
UK Dementia Research Institute
Imperial College London

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