[Bioc-devel] Ask for help to debug the error on riesling1

[Jianhong Ou, Ph.D.]

Hi Herv�,

Thank you for the information. I will try to figure out.

Jianhong.
________________________________
From: Herv� Pag�s <hpages.on.github using gmail.com>
Sent: Wednesday, April 7, 2021 1:54 AM
To: Jianhong Ou, Ph.D. <jianhong.ou using duke.edu>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Ask for help to debug the error on riesling1

Hi Jianhong,

Memory leaks and other memory errors are bugs in native code that often
exist on all platforms but typically manifest themselves in different
ways depending on the platform where it runs. Running your code thru a
tool like Valgrind should reveal these problems even if you do this on a
non-Windows machine. See
https://urldefense.com/v3/__https://bioconductor.org/developers/how-to/c-debugging/__;!!OToaGQ!6X7J1i17XSPaKkNmZMcdEY24rEjchLfeQ8YTdhLB68dZII3WDxYfoPTTpGr2AOjQ4ds$
for more information.

Best,
H.


On 4/6/21 6:46 AM, Jianhong Ou, Ph.D. wrote:
> Hi,
>
> The trackViewer package got error on Windows Server since version 1.27.4. I am totally lost to figure it out by myself. The current error message listed in building system is:
>
>
> * creating vignettes ... ERROR
> --- re-building 'changeTracksStyles.Rmd' using rmarkdown
> --- finished re-building 'changeTracksStyles.Rmd'
>
> --- re-building 'dandelionPlot.Rmd' using rmarkdown
> --- finished re-building 'dandelionPlot.Rmd'
>
> --- re-building 'lollipopPlot.Rmd' using rmarkdown
> --- finished re-building 'lollipopPlot.Rmd'
>
> --- re-building 'plotInteractionData.Rmd' using rmarkdown
>
> I suppose this is a memory leak error. But I don't have windows server to repeat the error. What is the best way to fix the issue? Thank you in advance for your help.
>
>
> Yours Sincerely,
>
> Jianhong Ou
>
> Email: jianhong.ou using duke.edu
> Bioinformatician II
> Department of Cell Biology
> Duke University School of Medicine
> Durham, NC, 27710
>
> Confidentiality Notice:\ This e-mail message, including ...{{dropped:12}}
>
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>

--
Herv� Pag�s

Bioconductor Core Team
hpages.on.github using gmail.com

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