[Bioc-devel] non-subsettable GRanges object

[Oleksii Nikolaienko]

Dear Bioc team,
my package has started to fail during the build check (
http://bioconductor.org/checkResults/devel/bioc-LATEST/ramr/). I tried to
figure out why and it appears that I somehow make GRanges object
non-subsettable. Could anyone from "GenomicRanges" developers look at my
issue and advise me on a solution, please?

To reproduce:

library(ramr)
data(ramr)
amrs <- getAMR(ramr.data, ramr.samples, ramr.method="beta", min.cpgs=5,
merge.window=1000, qval.cutoff=1e-3, cores=2)
# this works:
class(amrs)
amrs
# error:
amrs[2]
# suddenly works again:
GRangesList(amrs)[[1]][2]


Best regards,
Oleksii

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