[Bioc-devel] "length(url) == 1 is not TRUE" error for vignette only on build system

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Fri Sep 11 19:02:39 CEST 2020

At the top of each build report page, e.g.,


there's a link with title 'following settings' describing build-system-specific settings. Does this help to reproduce the problem?


On 9/11/20, 11:52 AM, "Bioc-devel on behalf of Shraddha Pai" <bioc-devel-bounces using r-project.org on behalf of shraddha.pai using utoronto.ca> wrote:

    Hello BioC-devel team,
    Any idea why netDx 1.1.4 fails on the bioc devel build system?

    This is the error:

    --- re-building 'Predict_CaseControl_from_CNV.Rmd' using knitr
    Quitting from lines 173-195 (Predict_CaseControl_from_CNV.Rmd)
    Error: processing vignette 'Predict_CaseControl_from_CNV.Rmd' failed
    with diagnostics:
    length(url) == 1 is not TRUE
    --- failed re-building 'Predict_CaseControl_from_CNV.Rmd'

    I just set up the Bioc-devel docker, cloned the repo using
    git clone git using git.bioconductor.org:packages/netDx
    and ran the vignette, and it runs through successfully.

    However the build error occurs across all platforms so something needs to

    Thank you,

    	[[alternative HTML version deleted]]

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