[Bioc-devel] "length(url) == 1 is not TRUE" error for vignette only on build system

[Martin Morgan]

At the top of each build report page, e.g.,

 http://bioconductor.org/checkResults/3.12/bioc-LATEST/netDx/malbec1-buildsrc.html 

there's a link with title 'following settings' describing build-system-specific settings. Does this help to reproduce the problem?

Martin


On 9/11/20, 11:52 AM, "Bioc-devel on behalf of Shraddha Pai" <bioc-devel-bounces using r-project.org on behalf of shraddha.pai using utoronto.ca> wrote:

    Hello BioC-devel team,
    Any idea why netDx 1.1.4 fails on the bioc devel build system?

    This is the error:

    --- re-building 'Predict_CaseControl_from_CNV.Rmd' using knitr
    Quitting from lines 173-195 (Predict_CaseControl_from_CNV.Rmd)
    Error: processing vignette 'Predict_CaseControl_from_CNV.Rmd' failed
    with diagnostics:
    length(url) == 1 is not TRUE
    --- failed re-building 'Predict_CaseControl_from_CNV.Rmd'


    I just set up the Bioc-devel docker, cloned the repo using
    git clone git using git.bioconductor.org:packages/netDx
    and ran the vignette, and it runs through successfully.

    However the build error occurs across all platforms so something needs to
    change.

    Thank you,
    Shraddha

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