[Bioc-devel] Maintenance of MetaNeighbor package

Nitesh Turaga ntur@g@@b|oc @end|ng |rom gm@||@com
Thu Sep 3 15:45:51 CEST 2020

Hi Stephan,

First, I’d like you to cc Dr. Jesse Gillis and also Manthan so we know that everyone is in agreement. 

I can help you with the permissions on the Bioconductor repo. Before you get permissions you will only be able to fetch using the HTTP protocol, i.e 

	git remote set-url upstream https://git.bioconductor.org/packages/MetaNeighbor <https://git.bioconductor.org/packages/MetaNeighbor>

	git fetch —all

Once you get the permissions you can modify the remote to use the SSH protocol instead.



> On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer using gmail.com> wrote:
> Hi,
> My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis 
> and I'm currently maintaining the internal version of the MetaNeighbor 
> package. The Bioconductor version of the package was previously 
> maintained by Manthan Shah, who left the lab about a year ago. I would 
> like to take over the maintenance of the MetaNeighbor package on 
> Bioconductor and sync it with our internal version. Here is what I would 
> like to do:
>  * Change of Github repository: Manthan hosted his own version of
>    MetaNeighbor on a personal Github to sync with Bioconductor. I would
>    rather use the Gillis lab Github instead. If I understand correctly,
>    this should not be too much of an issue, since the two repositories
>    have a shared history (Manthan forked the Gillis lab repo).
>  * Change of permission: I set the bioconductor URL upstream of the
>    Gillis lab repo, but when I try to fetch, I get a warning that I
>    don't have the right permissions. At a glance I could not find how
>    the permission system works. Would it be possible to update
>    permissions so that I (and maybe other lab members) can access the
>    Bioconductor repo?
> Thanks for your help!
> Best,
> Stephan
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