[Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'

[Mike Smith]

Thanks for the self contained example Gordon.  Just to add to the
confusion, I'm unable to replicate this on my Windows machine.  Both the
toy example and running R CMD check on limma or Biobase fail to produce the
NOTE.

I've tried within RStudio, RGui and at the command line.

The only differences I can see in our systems are the locale and a 1 digit
change in the Windows build.

> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)

Matrix products: default

locale:
[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United
Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C

[5] LC_TIME=English_United Kingdom.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] devtools_2.3.2 usethis_1.6.3

loaded via a namespace (and not attached):
 [1] rstudioapi_0.11   magrittr_1.5      rcmdcheck_1.3.3   pkgload_1.1.0
  R6_2.4.1
 [6] rlang_0.4.8       fansi_0.4.1       tools_4.0.3       pkgbuild_1.1.0
 xopen_1.0.0
[11] sessioninfo_1.1.1 cli_2.1.0         withr_2.3.0       ellipsis_0.3.1
 remotes_2.2.0
[16] assertthat_0.2.1  digest_0.6.25     rprojroot_1.3-2   crayon_1.3.4
 processx_3.4.4
[21] callr_3.5.1       fs_1.5.0          ps_1.4.0          testthat_2.3.2
 memoise_1.1.0
[26] glue_1.4.2        compiler_4.0.3    desc_1.2.0        backports_1.1.10
 prettyunits_1.1.1

On Mon, 19 Oct 2020 at 23:03, Gordon K Smyth <smyth using wehi.edu.au> wrote:

> Sorry, there was mistype in previous email. Here is the reproducible
> example again. This code produces the NOTE when run in a fresh R 4.0.3 for
> Windows session:
>
>   library(Rcpp)
>   Rcpp.package.skeleton("TestPack", example_code = TRUE)
>   library(devtools)
>   check("TestPack")
>
>
> > -----Original Message-----
> > From: Gordon K Smyth
> > Sent: Tuesday, 20 October 2020 7:58 AM
> > To: Martin Morgan <mtmorgan.bioc using gmail.com>; bioc-devel using r-project.org
> > Subject: RE: [Bioc-devel] R 4.0.3 for Windows R CMD check finds 'abort'
> >
> > If you're interested, here is a small reproducible example. This example
> uses
> > Rcpp, but I think that any src code will give the same NOTE:
> >
> >   library(Rcpp)
> >   Rcpp.package.skeleton("TestPack", example_code = TRUE)
> >   library(devtools)
> >   install.package("devtools")
> >   check("TestPack")
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