[Bioc-devel] Bioconductor 3.12 db0s, OrgDbs and TxDbs now available

[Interdonato, Kayla]

My apologies - I seem to have a typo in the names of the updated OrgDb packages. Please see the following corrected list:



    org.Ag.eg.db_3.12.0.tar.gz

    org.At.tair.db_3.12.0.tar.gz

    org.Bt.eg.db_3.12.0.tar.gz

    org.Ce.eg.db_3.12.0.tar.gz

    org.Cf.eg.db_3.12.0.tar.gz

    org.Dm.eg.db_3.12.0.tar.gz

    org.Dr.eg.db_3.12.0.tar.gz

    org.EcK12.eg.db_3.12.0.tar.gz

    org.EcSakai.eg.db_3.12.0.tar.gz

    org.Gg.eg.db_3.12.0.tar.gz

    org.Hs.eg.db_3.12.0.tar.gz

    org.Mm.eg.db_3.12.0.tar.gz

    org.Mmu.eg.db_3.12.0.tar.gz

    org.Pf.plasmo.db_3.12.0.tar.gz

    org.Pt.eg.db_3.12.0.tar.gz

    org.Rn.eg.db_3.12.0.tar.gz

    org.Sc.eg.db_3.12.0.tar.gz

    org.Ss.eg.db_3.12.0.tar.gz

    org.Xl.eg.db_3.12.0.tar.gz

    PFAM.db_3.12.0.tar.gz



Best,

Kayla

From: "Interdonato, Kayla" <Kayla.Morrell using RoswellPark.org>
Date: Friday, October 16, 2020 at 11:25 AM
To: "bioc-devel using r-project.org" <bioc-devel using r-project.org>
Subject: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available

Hello Bioconductor Community!

The newest db0s, OrgDbs, and TxDbs annotation packages for the upcoming
Bioconductor 3.12 release are up and available for download in the devel version
of Bioconductor.

The deadline for submitting contributed annotations will be Wednesday October 21st.

The new db0 packages are:

anopheles.db0_3.12.0.tar.gz
arabidopsis.db0_3.12.0.tar.gz
bovine.db0_3.12.0.tar.gz
canine.db0_3.12.0.tar.gz
chicken.db0_3.12.0.tar.gz
chimp.db0_3.12.0.tar.gz
ecoliK12.db0_3.12.0.tar.gz
ecoliSakai.db0_3.12.0.tar.gz
fly.db0_3.12.0.tar.gz
human.db0_3.12.0.tar.gz
malaria.db0_3.12.0.tar.gz
mouse.db0_3.12.0.tar.gz
pig.db0_3.12.0.tar.gz
rat.db0_3.12.0.tar.gz
rhesus.db0_3.12.0.tar.gz
worm.db0_3.12.0.tar.gz
xenopus.db0_3.12.0.tar.gz
yeast.db0_3.12.0.tar.gz
zebrafish.db0_3.12.0.tar.gz

The new OrgDb packages are:

GO.db_3.12.0.tar.gz
org.Ag.eg.db_3.12.tar.gz
org.At.tair.db_3.12.tar.gz
org.Bt.eg.db_3.12.tar.gz
org.Ce.eg.db_3.12.tar.gz
org.Cf.eg.db_3.12.tar.gz
org.Dm.eg.db_3.12.tar.gz
org.Dr.eg.db_3.12.tar.gz
org.EcK12.eg.db_3.12.tar.gz
org.EcSakai.eg.db_3.12.tar.gz
org.Gg.eg.db_3.12.tar.gz
org.Hs.eg.db_3.12.tar.gz
org.Mm.eg.db_3.12.tar.gz
org.Mmu.eg.db_3.12.tar.gz
org.Pf.plasmo.db_3.12.tar.gz
org.Pt.eg.db_3.12.tar.gz
org.Rn.eg.db_3.12.tar.gz
org.Sc.eg.db_3.12.tar.gz
org.Ss.eg.db_3.12.tar.gz
org.Xl.eg.db_3.12.tar.gz
PFAM.db_3.12.tar.gz

The new TxDb packages are:

TxDb.Btaurus.UCSC.bosTau8.refGene_3.12.0.tar.gz
TxDb.Celegans.UCSC.ce11.ensGene_3.12.0.tar.gz
TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.12.0.tar.gz
TxDb.Ggallus.UCSC.galGal4.refGene_3.12.0.tar.gz
TxDb.Ggallus.UCSC.galGal5.refGene_3.12.0.tar.gz
TxDb.Mmulatta.UCSC.rheMac3.refGene_3.12.0.tar.gz
TxDb.Mmulatta.UCSC.rheMac8.refGene_3.12.0.tar.gz
TxDb.Mmusculus.UCSC.mm39.refGene_3.12.0.tar.gz
TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.12.0.tar.gz
TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.12.0.tar.gz
TxDb.Rnorvegicus.UCSC.rn5.refGene_3.12.0.tar.gz
TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq_3.12.0.tar.gz
TxDb.Sscrofa.UCSC.susScr11.refGene_3.12.0.tar.gz
TxDb.Sscrofa.UCSC.susScr3.refGene_3.12.0.tar.gz

Thank you!

Kayla E. Interdonato, MS
Programmer/Analyst
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
(716)845-1300 x4621


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