[Bioc-devel] Acceptable dataset origins besides ExperimentHub

Sean Davis @e@nd@v| @end|ng |rom gm@||@com
Tue Nov 10 13:29:51 CET 2020

Hi, Hector.

While an "unofficial" answer, there are many packages that access data from
public repositories, so using an EBI-supported repository and FTP site
seems perfectly acceptable to me.



On Tue, Nov 10, 2020 at 5:54 AM Hector Gracia <hgracia using ibecbarcelona.eu>

> Recently our package AlpsNMR was accepted in Bioconductor
> https://bioconductor.org/packages/devel/bioc/html/AlpsNMR.html
> For pass the review process we had to remove a dataset that was stored in
> Dropbox and that was used in one long tutorial about the package.
> Besides create an ExperimentHub package with this data, is there other
> ways to include this data in the package tutorial?
> I ask it because the dataset is public available in metabolights ftp and i
> like to know if this ftp can be considered as dedicated server that ensure
> logevity of the data
> ftp://ftp.ebi.ac.uk/pub/databases/metabolights/studies/public/MTBLS242/
> Or if the only way to do this is create a data package in ExperimentHub
> Thanks
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Sean Davis, MD, PhD
Center for Cancer Research
National Cancer Institute
National Institutes of Health
Bethesda, MD 20892

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