[Bioc-devel] Docker images for RELEASE_3_11 and devel on R-4.0.0

[Nitesh Turaga]

Hi Vinh,

According the the bioconda community, they have just finished rebuilding 
the CRAN binaries today and they will start the bioconductor packages 
now. They should be ready tomorrow or day after most likely.

For more bioconda related questions, I will refer you to 
https://gitter.im/bioconda/Lobby.

Best,

Nitesh

On 5/8/2020 5:44 AM, Vinh Tran wrote:
> Dear Nitesh,
>
> I would like to ask, is there any plan for updating the bioconductor 
> packages in bioconda? I saw in anaconda.org <http://anaconda.org>, 
> last update of all of the bioconductor packages (bioconductor-pkgname) 
> I have checked was 6 months ago. Do the update must be done by 
> bioconductor core team or can the package maintainers somehow do it by 
> themselves?
>
> Many thanks for your explanation.
> Best regards,
> Vinh
>
> --------------------------------
> Dr. Vinh Tran
>
> Dept. for Applied Bioinformatics
> Inst. for Cell Biology and Neuroscience
> Goethe University Frankfurt
>
> Biologicum, Room 3.209
> Phone +49 (0)69/798-42118
>
>
>
>
>> On 8. May 2020, at 00:43, Nitesh Turaga <nturaga.bioc using gmail.com 
>> <mailto:nturaga.bioc using gmail.com>> wrote:
>>
>> Dear Maintainers,
>>
>> The latest set of docker images on R-4.0.0 are now available on 
>> docker hub. You can access the latest images with,
>>
>> docker pull bioconductor/bioconductor_docker:devel
>>
>> docker pull bioconductor/bioconductor_docker:RELEASE_3_11
>>
>> docker pull bioconductor/bioconductor_docker:latest
>>
>>
>> Note: The "latest" tag now points to the RELEASE_3_11 version of 
>> Bioconductor.
>>
>> Details:
>>
>> - The new set of docker images inherit from the latest stack of 
>> images produced by rocker 
>> (https://github.com/rocker-org/rocker-versioned2). It has taken some 
>> time to produce the new images because the rocker images have been 
>> developed on Ubuntu 18.04 base images, as opposed to Debian.
>>
>> - With the new 'bioconductor/bioconductor_docker' images being 
>> available on Ubuntu 18.04, we move closer to mimicking the 
>> Bioconductor linux build machine.
>>
>> - Both images which are produced now, build almost all the packages 
>> in Bioconductor. RStudio is also available as in previous versions.
>>
>> Best regards,
>>
>> Nitesh Turaga
>> Bioconductor Core Team
>> _______________________________________________
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>