[Bioc-devel] Could not read from remote repository

Nitesh Turaga ntur@g@@b|oc @end|ng |rom gm@||@com
Mon May 4 17:20:49 CEST 2020


Everything looks fine. It's very unusual to see that you are getting RW permissions shown from `ssh -T` and you are not able to access your package. 

It could be a firewall / transient issue with your internet. But, just for the sake of it could you try adding another SSH key to your BiocCredentials account and then trying once again. 



On 5/4/20, 11:17 AM, "Yingxin Lin" <yingxin.lin using sydney.edu.au> wrote:

     Dear Nitesh,

    Thank you very much for the reply. I have attached my current config file and git remote screenshots. Hope this would help you to target the issues.

    Best regards,

    On 5/5/20, 1:11 am, "Nitesh Turaga" <nturaga.bioc using gmail.com> wrote:

        You must be using the wrong SSH key most likely. 

        If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 

        Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 



        On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces using r-project.org on behalf of yingxin.lin using sydney.edu.au> wrote:


            I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:

            (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
            Fetching origin
            From https://github.com/SydneyBioX/scClassify
            * branch            master     -> FETCH_HEAD
            Fetching upstream
            FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
            fatal: Could not read from remote repository.

            Please make sure you have the correct access rights
            and the repository exists.
            error: Could not fetch upstream

            And I have checked ssh -T git using git.bioconductor.org<mailto:git using git.bioconductor.org>, which indicates that I have R and W access for scClassify. The “~/.ssh/config” file is set as point 15 mentioned in https://www.bioconductor.org/developers/how-to/git/faq.

            Below is my remote setting:
            (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
            origin  https://github.com/SydneyBioX/scClassify.git (fetch)
            origin  https://github.com/SydneyBioX/scClassify.git (push)
            upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/scClassify.git (fetch)
            upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/scClassify.git (push)

            I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

            Best regards,
            Yingxin Lin

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