[Bioc-devel] Bioconductor 3.11 OrgDb and TxDb packages now available

Interdonato, Kayla K@y|@@Morre|| @end|ng |rom Ro@we||P@rk@org
Fri May 1 15:45:39 CEST 2020


Hello Bioconductor community,

Since releasing the 3.11.0 versions of the db0 packages, we have added in more recent GO information. Therefore a newer 3.11.1 version of db0s are now available (arabidopsis.db0 is now at version 3.11.2).

The new OrgDbs and TxDbs for Bioconductor 3.11 are now available.

The new OrgDbs are:

GO.db_3.11.0.tar.gz
org.Ag.eg.db_3.11.0.tar.gz
org.At.tair.db_3.11.0.tar.gz
org.Bt.eg.db_3.11.0.tar.gz
org.Ce.eg.db_3.11.0.tar.gz
org.Cf.eg.db_3.11.0.tar.gz
org.Dm.eg.db_3.11.0.tar.gz
org.Dr.eg.db_3.11.0.tar.gz
org.EcK12.eg.db_3.11.0.tar.gz
org.EcSakai.eg.db_3.11.0.tar.gz
org.Gg.eg.db_3.11.0.tar.gz
org.Hs.eg.db_3.11.0.tar.gz
org.Mm.eg.db_3.11.0.tar.gz
org.Mmu.eg.db_3.11.0.tar.gz
org.Pf.plasmo.db_3.11.0.tar.gz
org.Pt.eg.db_3.11.0.tar.gz
org.Rn.eg.db_3.11.0.tar.gz
org.Sc.sgd.db_3.11.0.tar.gz
org.Ss.eg.db_3.11.0.tar.gz
org.Xl.eg.db_3.11.0.tar.gz
PFAM.db_3.11.0.tar.gz

The new TxDbs are:

TxDb.Btaurus.UCSC.bosTau8.refGene_3.11.0.tar.gz
TxDb.Celegans.UCSC.ce11.ensGene_3.11.0.tar.gz
TxDb.Cfamiliaris.UCSC.canFam3.refGene_3.11.0.tar.gz
TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.11.0.tar.gz
TxDb.Ggallus.UCSC.galGal4.refGene_3.11.0.tar.gz
TxDb.Ggallus.UCSC.galGal5.refGene_3.11.0.tar.gz
TxDb.Mmulatta.UCSC.rheMac3.refGene_3.11.0.tar.gz
TxDb.Mmulatta.UCSC.rheMac8.refGene_3.11.0.tar.gz
TxDb.Ptroglodytes.UCSC.panTro4.refGene_3.11.0.tar.gz
TxDb.Ptroglodytes.UCSC.panTro5.refGene_3.11.0.tar.gz
TxDb.Rnorvegicus.UCSC.rn5.refGene_3.11.0.tar.gz
TxDb.Sscrofa.UCSC.susScr11.refGene_3.11.0.tar.gz
TxDb.Sscrofa.UCSC.susScr3.refGene_3.11.0.tar.gz

Thank you!

Kayla E. Interdonato, MS
Programmer/Analyst
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
(716)845-1300 x4621


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