[Bioc-devel] how to get write permission of my R Bioconductor package to Bioconductor github

[weiliang Qiu]

Dear Nitesh,
Thanks for your help! I just successfully activate my BiocCredentials
account and found GeneSelectMMD is shown in
https://git.bioconductor.org/BiocCredentials/permissions_by_user/. Thanks!

Best regards,

Weiliang



On Wed, Mar 4, 2020 at 11:38 AM Turaga, Nitesh <
Nitesh.Turaga using roswellpark.org> wrote:

>
> > Hi Weiliang,
> >
> > You would need to activate your BiocCredentials account and SSH keys to
> gain access to the package.
> https://git.bioconductor.org/BiocCredentials/account_activation/
> >
> > The email listed on the BiocCredentials page is weiliang.qiu using gmail.com .
> >
> > Best,
> >
> > Nitesh
> >
> >> On Mar 4, 2020, at 7:19 AM, Shepherd, Lori
> <Lori.Shepherd using RoswellPark.org> wrote:
> >>
> >> It looks like you tried to ask for help on the bioc-devel mailing list
> but it never went through.  I'm forwarding your email to another member on
> the team who is more versed with handling access issues.
> >>
> >> Cheers,
> >>
> >> Lori Shepherd
> >> Bioconductor Core Team
> >> Roswell Park Comprehensive Cancer Center
> >> Department of Biostatistics & Bioinformatics
> >> Elm & Carlton Streets
> >> Buffalo, New York 14263
> >> From: weiliang Qiu <weiliang.qiu using gmail.com>
> >> Sent: Tuesday, March 3, 2020 9:18 PM
> >> To: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
> >> Subject: Fwd: how to get write permission of my R Bioconductor package
> to Bioconductor github
> >>
> >> Dear Lori,
> >> I found I don't have write permission to GeneSelectMMD in Bioconductor
> github. Do you know how I can get the write permission so that I can git
> push the changes? Thanks!
> >>
> >> Best regards,
> >>
> >> Weiliang
> >>
> >>
> >> ---------- Forwarded message ---------
> >> From: <bioc-devel-owner using r-project.org>
> >> Date: Sun, Mar 1, 2020 at 10:56 AM
> >> Subject: Re: how to get write permission of my R Bioconductor package
> to Bioconductor github
> >> To: <weiliang.qiu using gmail.com>
> >>
> >>
> >> The message's content type was not explicitly allowed
> >>
> >>
> >>
> >>
> >> ---------- Forwarded message ----------
> >> From: weiliang Qiu <weiliang.qiu using gmail.com>
> >> To: bioc-devel using r-project.org
> >> Cc:
> >> Bcc:
> >> Date: Sun, 1 Mar 2020 10:56:25 -0500
> >> Subject: Re: how to get write permission of my R Bioconductor package
> to Bioconductor github
> >> Dear Sir/Madam,
> >> The error message I got is slightly different from what I got
> previously. The previous error message is:
> >> ------------------------------
> >> $ git push upstream master
> >> FATAL: W any packages/GeneSelectMMD w.qiu DENIED by fallthru
> >> (or you mis-spelled the reponame)
> >> fatal: Could not read from remote repository.
> >>
> >> Please make sure you have the correct access rights
> >> and the repository exists.
> >> ---------------------------------
> >>
> >> Best Regards,
> >>
> >> Weiliang
> >>
> >>
> >> On Sun, Mar 1, 2020 at 10:47 AM weiliang Qiu <weiliang.qiu using gmail.com>
> wrote:
> >> Dear Sir/Madam,
> >> I am revising my Bioconductor package 'GeneSelectMMD' and would like to
> git push it to Bioconductor github.
> >>
> >> I followed the instructions on
> https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ and
> on https://bioconductor.org/developers/how-to/git/push-to-github-bioc/.
> >>
> >> I successfully created github repository GeneSelectMMD and pushed my
> local changes to github repository.
> >>
> >> However, I got error message when I git push the changes to
> Bioconductor github.
> >>
> >> The followings are some output for your reference:
> >>
> >> ---------------------------------
> >> $ git remote -v
> >> origin  git using github.com:weiliangqiu/GeneSelectMMD.git (fetch)
> >> origin  git using github.com:weiliangqiu/GeneSelectMMD.git (push)
> >> upstream        git using git.bioconductor.org:packages/GeneSelectMMD.git
> (fetch)
> >> upstream        git using git.bioconductor.org:packages/GeneSelectMMD.git
> (push)
> >>
> >> $ git push upstream master
> >> Load key "/c/Users/kunling/.ssh/mySSHkey": invalid format
> >> git using git.bioconductor.org: Permission denied (publickey).
> >> fatal: Could not read from remote repository.
> >>
> >> Please make sure you have the correct access rights
> >> and the repository exists.
> >> ----------------------------------------------------------------
> >>
> >> I then followed instruction on
> https://www.bioconductor.org/developers/how-to/git/faq/
> >> and checked "ssh -T git using git.bioconductor.org" and found I only have
> read permission to GeneSelectMMD Bioconductor github.
> >>
> >> I also check  BiocCredentials and found that I only have access to my
> another Bioconductor package 'iCheck' and don't have permission access to
> GeneSelectMMD. Please see the screen print below:
> >>
> >>
> >> <image.png>
> >>
> >> Could you advise me how to get write permission to GeneSelectMMD so
> that I can git push changes to Bioconductor github? Thanks!
> >>
> >> By the way, is there a website where I can directly upload .tar.gz file
> of the revised GeneSelectMMD package? Thanks!
> >>
> >> Best regards,
> >>
> >> Weiliang
> >
> >
> >
> > This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
>

	[[alternative HTML version deleted]]