[Bioc-devel] how to get write permission of my R Bioconductor package to Bioconductor github

[Turaga, Nitesh]

Hi Weiliang,

You would need to activate your BiocCredentials account and SSH keys to gain access to the package. https://git.bioconductor.org/BiocCredentials/account_activation/

The email listed on the BiocCredentials page is weiliang.qiu using gmail.com .

Best,

Nitesh 

> On Mar 4, 2020, at 7:19 AM, Shepherd, Lori <Lori.Shepherd using RoswellPark.org> wrote:
> 
> It looks like you tried to ask for help on the bioc-devel mailing list but it never went through.  I'm forwarding your email to another member on the team who is more versed with handling access issues. 
> 
> Cheers, 
> 
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: weiliang Qiu <weiliang.qiu using gmail.com>
> Sent: Tuesday, March 3, 2020 9:18 PM
> To: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
> Subject: Fwd: how to get write permission of my R Bioconductor package to Bioconductor github
>  
> Dear Lori,
> I found I don't have write permission to GeneSelectMMD in Bioconductor github. Do you know how I can get the write permission so that I can git push the changes? Thanks!
> 
> Best regards,
> 
> Weiliang
> 
> 
> ---------- Forwarded message ---------
> From: <bioc-devel-owner using r-project.org>
> Date: Sun, Mar 1, 2020 at 10:56 AM
> Subject: Re: how to get write permission of my R Bioconductor package to Bioconductor github
> To: <weiliang.qiu using gmail.com>
> 
> 
> The message's content type was not explicitly allowed
> 
> 
> 
> 
> ---------- Forwarded message ----------
> From: weiliang Qiu <weiliang.qiu using gmail.com>
> To: bioc-devel using r-project.org
> Cc: 
> Bcc: 
> Date: Sun, 1 Mar 2020 10:56:25 -0500
> Subject: Re: how to get write permission of my R Bioconductor package to Bioconductor github
> Dear Sir/Madam,
> The error message I got is slightly different from what I got previously. The previous error message is:
> ------------------------------
> $ git push upstream master
> FATAL: W any packages/GeneSelectMMD w.qiu DENIED by fallthru
> (or you mis-spelled the reponame)
> fatal: Could not read from remote repository.
> 
> Please make sure you have the correct access rights
> and the repository exists.
> ---------------------------------
> 
> Best Regards,
> 
> Weiliang
> 
> 
> On Sun, Mar 1, 2020 at 10:47 AM weiliang Qiu <weiliang.qiu using gmail.com> wrote:
> Dear Sir/Madam,
> I am revising my Bioconductor package 'GeneSelectMMD' and would like to git push it to Bioconductor github.
> 
> I followed the instructions on https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ and on https://bioconductor.org/developers/how-to/git/push-to-github-bioc/.
> 
> I successfully created github repository GeneSelectMMD and pushed my local changes to github repository. 
> 
> However, I got error message when I git push the changes to Bioconductor github.
> 
> The followings are some output for your reference:
> 
> ---------------------------------
> $ git remote -v
> origin  git using github.com:weiliangqiu/GeneSelectMMD.git (fetch)
> origin  git using github.com:weiliangqiu/GeneSelectMMD.git (push)
> upstream        git using git.bioconductor.org:packages/GeneSelectMMD.git (fetch)
> upstream        git using git.bioconductor.org:packages/GeneSelectMMD.git (push)
> 
> $ git push upstream master
> Load key "/c/Users/kunling/.ssh/mySSHkey": invalid format
> git using git.bioconductor.org: Permission denied (publickey).
> fatal: Could not read from remote repository.
> 
> Please make sure you have the correct access rights
> and the repository exists.
> ----------------------------------------------------------------
> 
> I then followed instruction on https://www.bioconductor.org/developers/how-to/git/faq/
> and checked "ssh -T git using git.bioconductor.org" and found I only have read permission to GeneSelectMMD Bioconductor github.
> 
> I also check  BiocCredentials and found that I only have access to my another Bioconductor package 'iCheck' and don't have permission access to GeneSelectMMD. Please see the screen print below:
> 
> 
> <image.png>
> 
> Could you advise me how to get write permission to GeneSelectMMD so that I can git push changes to Bioconductor github? Thanks!
> 
> By the way, is there a website where I can directly upload .tar.gz file of the revised GeneSelectMMD package? Thanks!
> 
> Best regards,
> 
> Weiliang



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